Sbim009080.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020181.1:15240461-15241858[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.034 5.1 9.1 0.3 9 23 2 17 1 17 0.91 2 13 1.2 1.8e+02 4.2 2.2 1 23 23 46 23 46 0.90 3 13 2.6e-07 4e-05 25.1 0.6 1 23 61 84 61 84 0.97 4 13 0.037 5.6 8.9 0.8 1 20 90 109 90 113 0.90 5 13 1.6e-06 0.00024 22.7 5.8 1 23 119 141 119 141 0.98 6 13 8.6e-07 0.00013 23.5 4.4 1 23 147 169 147 169 0.99 7 13 1.7e-05 0.0025 19.5 4.1 1 23 175 197 175 197 0.98 8 13 0.00017 0.026 16.3 2.4 1 23 215 237 215 237 0.97 9 13 2.9e-05 0.0043 18.7 3.0 1 23 249 271 249 271 0.97 10 13 7.9e-06 0.0012 20.5 1.1 1 23 283 305 283 305 0.98 11 13 1.1e-05 0.0016 20.1 2.6 1 23 354 376 354 376 0.98 12 13 4.2e-05 0.0063 18.2 2.2 1 23 397 419 397 419 0.98 13 13 5e-05 0.0076 18.0 2.1 1 23 440 462 440 462 0.98
Sequence Information
- Coding Sequence
- ATGAAGTTTACACGTAGATACAATCTTGAGCGTCATATTGTAAGGGCTCATAAAGGTGTAAAACATTATAAATGTCGTCACTGCATTGCAACATTTTCACGAGAGGAACACCGTGATAGCCATGTACTAGAAGTccacaaacttaaaaaatcgtcAGAAATGTATTTCGgaaaaaaaccgtttgtttgTCAGCAATGTGATATAGCGTTTACACGTAAATACAATCTTGAGCGCCATATTTTATCGACTCATAAAGGTGAAAAGCCTTATGAATGTCGTCACTGCATTGCAACATTTTCACGAATCGAACACCTCGAAAACCATGAAGTAGAAGTCCACAAACGTGAAAAATCGTATGAATGTGAACATTGCAGTAAGAAATTCACCAGAGAATATCATCTTAAAACCCATATGTTAATTCACACTGATGAAAAAACCTACGAATGTGAGCactgctttaaaaaatttatacaaaaaagtaatCTCAAGACTCATTTATTAACACATgacaaccaaaaattatttgaatgtaAAGAATGTAATAGAAAGTATAAACATAAGGGCAAACTTACTAAACACTTATTGATTCACTCTGGAGAAAATcttgataaaattgaaataataacagAAGATGACGAACCATTCAATTGCTATCGTTGTGATAAACAGTTTAAACTAGAAAGGAATTTGAAGAAACATTTATTAGTTCACTCTGAAGAAAATCTTGAAGAAAATGATGACCCATTCAAATGTGATTATTGcgataaaaagtttaaattaggaagaaaccttaaaaaacaCTTATTCGTTCATtctaaagaaatcaaaaatgaaGATGATAAACTCTTCAAATGCGAATTTTGCAATAAAGAATTTAAACTAGAAAGAAATCTTGAGAAACACATATTGATTCActctaaagaaaatattgaggaaaaaataaatgaagatatcaaaCATGAAGATGATGGACTTAAGAAACACTTATTTGTTCATCCTAAtgaaaatattgaggaaaaacTAATTGAAGATATTATTAAACAAGAAGATGATGAACTTTTCACATGTGAATATTGCGATAAGAAATTTAAActagaaaaaaaacttaagaaaCACTTATTGGTGCATTCTAAtgaaaatattgaggaaaaGCTAAATGAAGATATTAAACAGGAGAATGATGAACTCTTCAAATGTGATTTTTGCGATAAAGAGTTTAAActagaaaaaaaacttaagaaaCACTTATTGGTGCATTCTaatgaaaatattgaagaaaaacTAAATGGAGATATTAAACATGAGAATGATGAACTCTTCAAATGTGATTTTTGCGATAAAGAGTTTAAACTagaaagaaaacttaaaaaacacttATTAGTTCACTCTGAATCTTga
- Protein Sequence
- MKFTRRYNLERHIVRAHKGVKHYKCRHCIATFSREEHRDSHVLEVHKLKKSSEMYFGKKPFVCQQCDIAFTRKYNLERHILSTHKGEKPYECRHCIATFSRIEHLENHEVEVHKREKSYECEHCSKKFTREYHLKTHMLIHTDEKTYECEHCFKKFIQKSNLKTHLLTHDNQKLFECKECNRKYKHKGKLTKHLLIHSGENLDKIEIITEDDEPFNCYRCDKQFKLERNLKKHLLVHSEENLEENDDPFKCDYCDKKFKLGRNLKKHLFVHSKEIKNEDDKLFKCEFCNKEFKLERNLEKHILIHSKENIEEKINEDIKHEDDGLKKHLFVHPNENIEEKLIEDIIKQEDDELFTCEYCDKKFKLEKKLKKHLLVHSNENIEEKLNEDIKQENDELFKCDFCDKEFKLEKKLKKHLLVHSNENIEEKLNGDIKHENDELFKCDFCDKEFKLERKLKKHLLVHSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -