Sbim003480.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020180.1:17806502-17809471[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.2e-05 0.012 17.3 2.4 1 23 195 217 195 217 0.97 2 13 9.4e-06 0.0014 20.3 3.8 2 23 222 243 221 243 0.97 3 13 6.8e-05 0.01 17.5 1.7 1 23 249 271 249 271 0.98 4 13 0.035 5.3 9.0 1.6 1 23 277 301 277 301 0.98 5 13 0.029 4.4 9.3 0.4 1 23 321 343 321 343 0.97 6 13 0.00022 0.033 16.0 3.1 1 23 350 372 350 372 0.97 7 13 1.9e-06 0.00028 22.5 2.1 2 23 377 398 376 398 0.97 8 13 6.7e-07 0.0001 23.9 1.7 1 23 404 426 404 426 0.98 9 13 0.04 6 8.9 6.6 1 23 432 456 432 456 0.96 10 13 0.0001 0.015 17.0 2.9 1 23 462 484 462 484 0.97 11 13 2.9e-06 0.00043 21.9 1.0 1 23 493 515 493 515 0.98 12 13 2.3e-05 0.0035 19.0 3.3 1 23 521 543 521 543 0.97 13 13 1.1e-06 0.00017 23.2 2.3 1 23 549 571 549 571 0.96
Sequence Information
- Coding Sequence
- ATGAACGTAACAAGTAGGAGAAGAGTTTGCAGAACATGCCTGGCATATGAAAATTCATATCAATTCGAGTCAATTTTCAGAATTGACGAAGATCCTAAAATTAGCTTCGCAGACATGATTATGTCAAGCTTATCCTCAATTCAAATTTGTTTAAATGATGGACTTCCGGATGAAATTTGTTCGTCTTGTGCTACAAAAGTTTTGGATTCctataagtttaaattaaaaattgaggaaaGTGATGTAAAATTAagatcacaaaaaattaaaatcgagGACGATACTGAAAACATTAAGGTTGAGGCAATtctacaaaaaagttttgaagaaaatttcatTATGCCAATGAAATTCGAGCTTAGAAATGATAGTTTTCAGCAAGTAAGCGAAGATTTATCTACTGAAGTTAATGTATTTGAGAATAATAGAATTAAAAGCGAAGTTAAACATGATATAAGCTTTAAAACGGAAGCAATTTATTTTCCTGTTGAAGATGAAAGAACGACTGAGTGTGAATCGATTGGAAATATTGTTGAAGGTGGCAATAATAGCAATGATGGGAATCAAGttcCTGATGGACTTTACGAGtgtgaaatttgtaaaaaaaagtttaaagagTTAAAGCAACTTAAGCAGcataaatatgtacatataaaACACCTTCAATGCGAGTATTGTGGTAAAAAGTTTTCACAAAAATGTCATCTTTTAGAACATGTAGCAACACACACTGGCATAGGACGATTCGAATGTGGGGAATGCCAtgaaaagtatattaaaaatactaatcTACTAAAACATTTATTAACACACTCGAATAAAAAACCATTCCAATGTGATCGTAAGGattgttttatgaaatttgtgCTAAGGACTTCTTACGAAAGTCATTTATTAACACATCCAAATGAAATAGAGGATGAGGAACCTAGTGTATCAGAAGAATTGATGCAAACTAATTTTACTTGTGAAATTTGTAATAATCACTTTCCCACTGTTATAGCTTTAGATTTACATGCAAAAAAGCACATAAGAGACAATTTCGCCTACGAGTgtgaattttgtaataaaaaatttcaaagtaaacTATATCTTAAAAGACATTTATTTGTGCACAAAAAACCTCTTCAATGTGAGTATTGTGGAAAAACTTTTGGACAAAAAAATCATCTAGAAGAACACAGAAGTACGCACACTGGTGAAAAACCATACGAGTGTGAAGAATGCCATAGAacttttgcacaaaaaagtgctTTACGCCAACACATATTTATGCACACCAAAGAAAAACCCTTTCATTGTCAGCttgaaaattgtaacaaaaaatttacacaTAGGAGAACATACGATAATCACCTACTGACGCATACAAAAGAAAAACCACACGAGTGCCATCTTTGTGACAGAAAATTCGGTATCAAgggaaatcttaaaaaacacCTGTTAATACATGAGGGTAAAATTAGGAGCAAATCATTCCAGTGTACGTTGTGTGATAAAAGTTTTTCGGCAAAAAAAAGTCTTCAAGACCATGTGTTGACTCATACCGGTGAAAAACCGTTTGAATGTGATCAGTGCAAAAAGAAGTTTACTCATAAGAATACTCTAAAGGAGCATTTGGCAGTTCATACAGGGGAAAGGGCTTTTAAGTGCCAGGAGTGTAAAAAAACTTTTGCTTTTAGGAGCAATCTTAGACAACATATGGTATTACATGCACCTGAAAGACAAATTAAAGAGGCACAGAGTGATTAA
- Protein Sequence
- MNVTSRRRVCRTCLAYENSYQFESIFRIDEDPKISFADMIMSSLSSIQICLNDGLPDEICSSCATKVLDSYKFKLKIEESDVKLRSQKIKIEDDTENIKVEAILQKSFEENFIMPMKFELRNDSFQQVSEDLSTEVNVFENNRIKSEVKHDISFKTEAIYFPVEDERTTECESIGNIVEGGNNSNDGNQVPDGLYECEICKKKFKELKQLKQHKYVHIKHLQCEYCGKKFSQKCHLLEHVATHTGIGRFECGECHEKYIKNTNLLKHLLTHSNKKPFQCDRKDCFMKFVLRTSYESHLLTHPNEIEDEEPSVSEELMQTNFTCEICNNHFPTVIALDLHAKKHIRDNFAYECEFCNKKFQSKLYLKRHLFVHKKPLQCEYCGKTFGQKNHLEEHRSTHTGEKPYECEECHRTFAQKSALRQHIFMHTKEKPFHCQLENCNKKFTHRRTYDNHLLTHTKEKPHECHLCDRKFGIKGNLKKHLLIHEGKIRSKSFQCTLCDKSFSAKKSLQDHVLTHTGEKPFECDQCKKKFTHKNTLKEHLAVHTGERAFKCQECKKTFAFRSNLRQHMVLHAPERQIKEAQSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01371623;
- 90% Identity
- iTF_01371623;
- 80% Identity
- -