Sbim037161.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020185.1:29160824-29163475[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.011 1.6 10.6 0.1 2 20 34 52 33 54 0.92 2 14 0.0025 0.38 12.6 0.1 1 20 60 79 60 80 0.95 3 14 9.3e-05 0.014 17.1 3.9 1 23 88 110 88 110 0.97 4 14 2.1e-06 0.00031 22.3 0.4 2 23 117 138 116 138 0.98 5 14 0.00011 0.017 16.9 0.9 1 23 225 247 225 247 0.96 6 14 0.0037 0.56 12.1 0.6 1 20 255 274 255 276 0.93 7 14 0.00069 0.1 14.4 5.5 1 20 339 358 339 361 0.92 8 14 0.00019 0.029 16.1 0.4 1 23 366 389 366 389 0.94 9 14 4.3e-06 0.00064 21.3 0.3 1 23 395 417 395 417 0.98 10 14 2.5e-06 0.00037 22.1 1.7 1 23 424 446 424 446 0.99 11 14 0.00028 0.042 15.6 0.3 3 23 454 474 452 474 0.97 12 14 5.6e-05 0.0084 17.8 0.7 1 23 480 503 480 503 0.96 13 14 0.047 7 8.6 1.5 3 23 517 537 515 537 0.95 14 14 0.0082 1.2 11.0 0.7 2 23 668 689 667 689 0.95
Sequence Information
- Coding Sequence
- atgGCTGTTGAAGCTCTACGGCAGCTAGGTAATTCAGCTTATTCAAATCAGGAACACAATCGAATTACAACAACTACTCCCCTGGATTTACCACTGTTGCCTTGTCCTACATGTCACATGGAATTCAGGACGACTGCGGATTTAAGCAGCCACGAAGAGATTTGTagagaaaatcaatttatttgccCAATTTGTAGCGAATCATTTGATCGAAAATTAGATATGAATAATCATTTAGTGTGCCATGCAGTTGACCGTCCACATTCGTGTCGAATTTGTGGGACATTATTCGTACACAAAAAGGATCTTCAACTACACATGCAAACACATGGTGCCAACACCCAGAATCAATGCCAAATATGTGGTCTTCAATTCAACCGACCTTCAAGCCTTACAAATCACTTAAAAATCCATGCTTATCAACCTGGACGTTTGATACCACACGATATACCAAATGAAGAAATTTCATCGGAACCGACCCAAAAAATTGCATTACCTAGTATTCATAATATCACCATGCACAATTGGAATTTAAGTTTTGAACCGGACAATTTTCAAGCTGATATGAGTTTAGAAGTTGCTCAAGATGTTACAATTGATACAACGTTAAATGATCAAAATGTTGGTTTTGTTGAAACAACTATAGTGCAAGAGCCTACTGATTCAAAACCACATGCCTGTAATCTTTGCCCAAAACGGTTTGCTAGAGAAAAAGCCTTACTCTCGCACCTAAAACTacacaaaaatgtttttgataaaaattttaattgtgataGGTGTGATCAAAATTTTAGCAATCAAGCGTCTTTTGATAAACACGTATCGAGTTGCAATATACAGAATGTTAAAGTTAGTAgcacaacaaaaaaaattgtaaaacctgCCAAGGAAATAGTACaaaatgaagtaattaataagacagaatttattgaaaaagaaGTTAAACCAGAAGTAACTTCGCCTGAAGCAGTAAGCACGGACTACGATGTTAATGTTTATAAGAAGATTTATAAGCATTGCTGTGAAATATGTGGAAAACACTTTTCaaccaaacaaaaattatttagacacgTGTGGATTCATAGGAAGAAGCAGTACACTTGTGAGGTTTGCGATAAACAGTTCGACAGGCAACAGTTATTGGATTCCCATCGATTGGCTAATCATCAATCAGGTTCACCTTATGTTTGCTCTGAATGTGGCAAAAACTTCTCCACAAGACaagGTTTATGGGAACACAATAGGATACATACAGTGGATATAAACTCCTTCAAATGCGTTGAATGTGGTAAAACATTCACAAGTCGGCAAGGCTTCCTAATTCATCAAAGAAAACATAAAGGTGAGAGACCATACGGGTGTCGGTATTGTTGGAAAGCTTTCCGAGATGGTGGTACTTTAAGAAAGCATGAAAGAATTCATACAGGAGAACGCCCTCACGCTTGTCCACTTTGCTCTAAAGCTTTCaaccaaaaagttgttttaagGGAGCATATCAGAATGCGCCATACCACCCCGATGGAACCTGATGCTGAAGGAAAATTTGGGTGCACAATTTGTACCATTAAAACCTCAGATAAAGATGAGTTGTGCGTTCATTTTGTGAAACATAGTGATCAAATGGCCCAATTGGCTAAAGACGCGTCTAAAAATAACATTCCCAAAACTCCTGAAACAACAAGAAAGAGGAAAAGAACAGTTACCCCAAAGGTCGAGGTGCTTCCAATAGAACAACTTAGTAAGGAAGATGTGGAAGATGAACCGGTTTTGTCTGATTTTGAGcataaaattgagattttagAAGAGCAGGTTCATGAGAATAATATTGAATTCGCTGACGTTGAAGGGGAATGTGATAATCTTGATGATAGTATTAGTACTGGGGTAATTAATAGTATTGATGGTGGTCTTATGAAAGATATTATTGAGGATACAACTGAGGATCCTTTAATTAATAGAGTCGATAACGAAAATGATCAAACTGATATGTTTAGTAGTGTGCAATGTCATTTATGTGGGATCGTTTTGAATACAAAAACTGAATTTAATGAACATTCTAAGGCTCacgtttag
- Protein Sequence
- MAVEALRQLGNSAYSNQEHNRITTTTPLDLPLLPCPTCHMEFRTTADLSSHEEICRENQFICPICSESFDRKLDMNNHLVCHAVDRPHSCRICGTLFVHKKDLQLHMQTHGANTQNQCQICGLQFNRPSSLTNHLKIHAYQPGRLIPHDIPNEEISSEPTQKIALPSIHNITMHNWNLSFEPDNFQADMSLEVAQDVTIDTTLNDQNVGFVETTIVQEPTDSKPHACNLCPKRFAREKALLSHLKLHKNVFDKNFNCDRCDQNFSNQASFDKHVSSCNIQNVKVSSTTKKIVKPAKEIVQNEVINKTEFIEKEVKPEVTSPEAVSTDYDVNVYKKIYKHCCEICGKHFSTKQKLFRHVWIHRKKQYTCEVCDKQFDRQQLLDSHRLANHQSGSPYVCSECGKNFSTRQGLWEHNRIHTVDINSFKCVECGKTFTSRQGFLIHQRKHKGERPYGCRYCWKAFRDGGTLRKHERIHTGERPHACPLCSKAFNQKVVLREHIRMRHTTPMEPDAEGKFGCTICTIKTSDKDELCVHFVKHSDQMAQLAKDASKNNIPKTPETTRKRKRTVTPKVEVLPIEQLSKEDVEDEPVLSDFEHKIEILEEQVHENNIEFADVEGECDNLDDSISTGVINSIDGGLMKDIIEDTTEDPLINRVDNENDQTDMFSSVQCHLCGIVLNTKTEFNEHSKAHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -