Sbim002517.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020180.1:4239082-4246941[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.5 3.8e+02 3.2 0.1 2 17 65 80 64 81 0.84 2 13 0.0069 1 11.2 0.5 1 23 306 328 306 328 0.95 3 13 2e-05 0.003 19.2 1.6 1 23 336 358 336 358 0.99 4 13 8.5e-06 0.0013 20.4 0.7 2 23 366 387 365 387 0.96 5 13 3.9e-05 0.0058 18.3 0.7 1 23 393 415 393 415 0.98 6 13 1.6e-05 0.0024 19.5 2.2 1 23 422 444 422 444 0.99 7 13 0.00014 0.021 16.6 1.6 1 23 450 472 450 472 0.96 8 13 2e-05 0.003 19.2 0.1 1 23 478 500 478 500 0.98 9 13 5.6e-07 8.4e-05 24.1 0.7 1 23 506 529 506 529 0.96 10 13 9.5e-06 0.0014 20.2 0.4 1 23 535 558 535 558 0.96 11 13 2e-05 0.003 19.2 2.5 1 23 564 586 564 586 0.99 12 13 0.00014 0.02 16.6 0.4 1 23 592 614 592 614 0.94 13 13 0.0018 0.27 13.1 0.1 1 23 620 644 620 644 0.92
Sequence Information
- Coding Sequence
- ATGAGTGAGGAATTACTGGAAAATTCTACAAGTTCGAATTGTTTTATTTGCAACTCCGACGTTAGTTTATCAAAGAATGCTTtgacaatatttaataaagagACAAAAACATGTTCGAAAAGACCGTTGACTTATATTATGAACCAAGTCTTGGCTCAAGACTTGAATGAAGATAGTGTTCATTCAGAATTAATATGCAGCGACTGCTTCACATCTTTTGATAAAGTAGATGAATTAGAGCAAAAATTGGTGGATTTAAAGCTGATTCTTATCAGCAATTATAAAGATACTATGTTGAAAAATaaagtttctaaaattattaaaaataaagcatcGGAGTTGATGAAAAAGGTGaacgaaaaagaaaatttagtaCCAAAAAAGATTTTAGATATTCCTTCGTCTGATGATGAATCACCTGAGCCAATCTCTTCAGAGTCAAAAAAGGCAAGTTTAAACACAATTGATGAAATTGAGAAGGAATTGGAGAAAATGCAGGAAGATAAGAAAGAAGCTGAGATTTACACGGCGACTGATGCGGATACGATCTTATacgtattaaaaaatgactcgAATGATGACCTCGATTCAGAATCACGTGATAATACGGATGCTTTACTCCGAGCAGCTGAAATGGCTGAGAAAAGTCTTActgaaaaagtgaaaattgaAGTTGGTGACGAGGATttagttaataatattttgaaacgaAAAGCTCCTAGTGCTAATTCAGCTGCTTCTAATAAAGAATCCAATTTACCtgagaagaaaattaaaattgaatttgaacCCACAATGCTCGTTGAAAGAGATGATGATTTTTACACGTGCTTATTATGTGATGGGGACGAAACAGTAGGTGGTGATGCCAAACTTATAACACAGCACATCAAAGAAGCTCATGACCTTAGAATTTATATTTGCGATGTCTGCGGTGATCATTTTAAGAAAAGGAATGAATTATCGGCTCATTTGGATGACCATGTAGCTGCTGAAGAAGGAGATTTTCAATGTGAAATATGCAATCGTATTTTCAGTAATTTACGTTTATTTAGAATACATAAACGAATGCATAatcctcaaaataaattatggaattGCGAgcaatgtggaaaaaaatacagttctaaaaatttattagaagaACATCAGAATACACATACAGGTATAAGACCTTATGTTTGTCAAGCTTGCGGTAAAGATTTTGCttcaaaatatacttttaaagcGCACGAGAAGACCCATGAAGTACGACCTAGACCCTTTCAATGCAGTCAATgtgataaatcatttttaagcCAGCAGAATTTAACTCAACACGAAAGGACACATAGTGGCATTAAAGAATTTTCCTGTCACTTATGTGataaGCAATTTGGTTCAGCTCATAATTTGGAAGTCCATTCAATTGTACATACAGGATATAAGCCATTTGAATGTGCGTTATGTGGTAAAGCTTTTGCTAGAAAAGCCGAAATTCGTGATCATGAACGTACACATACAGGCGAAAGACCCTATCAATGTGAGCTTTGTGGAGCTACTTTTAGTCAACGTTCCAATTTGCAGTCACATAAACGCGCTACTCATTACGATGATAAACGTTACAGATGTGAAGAATGCGGTAAAGGATTTAAAAGACGAAGATTATTAGATTATCATATAAAAGCTGCACATACGGGCGAGAGACCATTTAAATGTAATGTATGTGAGGCTACTTTTGTGTATCCAGAACACTTTAAAAAACATAGAAGAATTCATACTGGAGAAAAACCGTTCTTGTGTGAAGTTTGTGGTAAAGCCTTTAATAGCAGAGACAATCGTAACGCACATCGATTTGTACACTCTGATAAAAAACCTTATGAGTGTTTGGTTTGTGGTGCTGGGTTCATGCGGAAACCTTTACTATATCAACATATGCAATCGCAAGGACATTTGAATGATACTATTATCGTTAATCAACCACGATTAAATACAGATGATGGACAAATAATTACAgtaaattcTGATGGTGATATGGAATTAGTTAATCAGAGTGAAATTGATAGACTAGCGACCGATGATGACACACAAGAAGATTCAAAACTGTACATAGCAGACATAGCAGAACACATGTTGGTTGATGGTTCAAAAGTATCTGAGGGTACTTTAATCCTAGGGGACAATGGCGATGATAATGAAGGAGTTGGGCATATTATAATTGATGGACagcaaattcaATTTGCTGAAGCTGATGAAGAAGAAATAAATGAAGGAGTTGAGGACGATGAAGAAATGACTGCTGAAACATACACTGACCTTCTAGGCTCTCAAATAATCACAGGGCGTTCAGCCCAAATCATACAAACAAAAGAAGGCCCTATTCAATTTGTAGCCGTCAGAATTCCTAATGAAAAAGGTGAAAGTGAAGAAGCCTGGATTAAAATTGTACCTGATAGTACAGATTAA
- Protein Sequence
- MSEELLENSTSSNCFICNSDVSLSKNALTIFNKETKTCSKRPLTYIMNQVLAQDLNEDSVHSELICSDCFTSFDKVDELEQKLVDLKLILISNYKDTMLKNKVSKIIKNKASELMKKVNEKENLVPKKILDIPSSDDESPEPISSESKKASLNTIDEIEKELEKMQEDKKEAEIYTATDADTILYVLKNDSNDDLDSESRDNTDALLRAAEMAEKSLTEKVKIEVGDEDLVNNILKRKAPSANSAASNKESNLPEKKIKIEFEPTMLVERDDDFYTCLLCDGDETVGGDAKLITQHIKEAHDLRIYICDVCGDHFKKRNELSAHLDDHVAAEEGDFQCEICNRIFSNLRLFRIHKRMHNPQNKLWNCEQCGKKYSSKNLLEEHQNTHTGIRPYVCQACGKDFASKYTFKAHEKTHEVRPRPFQCSQCDKSFLSQQNLTQHERTHSGIKEFSCHLCDKQFGSAHNLEVHSIVHTGYKPFECALCGKAFARKAEIRDHERTHTGERPYQCELCGATFSQRSNLQSHKRATHYDDKRYRCEECGKGFKRRRLLDYHIKAAHTGERPFKCNVCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQSQGHLNDTIIVNQPRLNTDDGQIITVNSDGDMELVNQSEIDRLATDDDTQEDSKLYIADIAEHMLVDGSKVSEGTLILGDNGDDNEGVGHIIIDGQQIQFAEADEEEINEGVEDDEEMTAETYTDLLGSQIITGRSAQIIQTKEGPIQFVAVRIPNEKGESEEAWIKIVPDSTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -