Sbim002310.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020180.1:232235-252267[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0037 0.56 12.1 3.2 1 23 55 77 55 77 0.96 2 19 0.0058 0.87 11.5 0.8 1 23 80 102 80 103 0.94 3 19 0.34 51 5.9 5.7 1 23 108 130 108 130 0.98 4 19 3.1 4.6e+02 2.9 6.7 1 23 137 159 137 159 0.95 5 19 0.24 35 6.4 2.9 5 23 315 334 313 334 0.91 6 19 2.2e-05 0.0032 19.1 0.2 2 23 340 361 339 361 0.96 7 19 0.00049 0.074 14.8 1.0 1 23 370 393 370 393 0.93 8 19 1.5e-05 0.0023 19.6 0.2 3 23 400 420 399 420 0.97 9 19 1.8e-06 0.00027 22.5 0.4 1 23 444 467 444 467 0.96 10 19 4.8e-05 0.0072 18.0 0.1 1 23 473 495 473 495 0.98 11 19 0.014 2.1 10.3 0.2 1 13 501 513 501 515 0.92 12 19 0.0024 0.36 12.7 1.0 1 19 543 561 543 563 0.95 13 19 0.0048 0.72 11.7 3.7 2 23 587 609 586 609 0.94 14 19 0.015 2.2 10.2 0.1 2 23 615 636 614 636 0.96 15 19 1.4e-05 0.0022 19.7 1.3 1 23 645 668 645 668 0.96 16 19 4.4e-06 0.00066 21.3 1.1 2 23 674 695 673 695 0.97 17 19 0.0026 0.38 12.6 0.0 3 23 703 723 701 723 0.90 18 19 1.8e-06 0.00027 22.5 2.7 1 23 729 752 729 752 0.97 19 19 0.12 18 7.4 4.5 1 23 758 780 758 781 0.91
Sequence Information
- Coding Sequence
- ATGGATGAACCTTTTTATTTTCCTTTGGATGTTGAAGACGACAATAATCAaatattactatttaatattaaaggaGATGAAATTAAATCGGAGCATGATGATCACAATTATTACAGGGAAAATCAGCTTGCGCAAGAAATTAATCCACAATCAAAAGACGATCATACTTGCAAGCTTTgctctaaaatttttgataacgaGCATGATTTGATAACACATTTTGCTTCTCATAACCAATACCAGTGTCCAAAATGCGAAATGTCTTTCCCCAAAATCGCCCAGTTAGGCCTACACTTTCAAAATCACCACAATTCCAAGATATTCACTTGTCACTTATGTAAATTTGAGACAAAGCGTAAATTCTCGTTTATTCCTCACATGAAACGCCATGCCGAGGAGGAATTAAAATATCACTGTAATCAATGCGGAAAGAAATATCTATGTCGTGCCAATTTTAAcgaccatttaaaaaagcatgATTCCGAAGGACATATTTATATATGCGAAGAAAATCTATCAGCAAATAATGCCATCTTGTGTGCATACCGGACTATAATTGAAGCGATTGATAGGCGCGAGCGTGTAGCGGGTGTCTATTTTGATTTCAGCAAGGCATTTGACACCATAGATCATGCCTTGCTGATTTCAAAACTGGCACACTATGGCATTCGAGGCAATGCTGGAAAATGGGTAGAGAGCTACTTAAGTAACCGAAGTCAAAGTGTGTCCTGGAATAACCAACTTTCTAGCTCCAAAAAAGTATTCAGTGGGGTTCCACAGGGAGGAAAAATCACTCATTATGCTGATGATACCTCAGTAATTGTACAAGGCGAGGACAATAAAATGGTAAAGGACTCCATTAATCTTAGCCTGGTATTAAACATAAGTAACTGTGTAGCAATTAATTTCTCTATTGCAAAAGTATCACAGGAACTTCCTCTTAAATGTACAAAAGTTTGCCGAAGTGAAGAAGAATTAAAACGGCATGTTCATcataaacacaaaaatttacGTTGGAATTGCGATCTTTGTTCAAAAGATTTTGCAGATCCTTACGCTCTAAAATCGCATCAAAAAACCCATAAACCAGATTATCAAAAGCCGGAACATAAATGCGAGTTATGTTTCAAAACGTTCTCagcaaaaaatggtttaaaaattcACATGGATGGAGTGCATAAACTTACCAAGCCCATATGTGATATATGTGGAAAACAATTTAATTCGCCCAATGGTTTACGTGTACATATGTTTTCACATACTGGAGTAAAGAAGCATGTATGCGAGGCACATCAAAATACACACAACCCGGATTATCAAAAACCACAATTCACCTGCGAAATTTGTTCGAAATCTTTTGCTTCTAATAAAACGTTAAGGATTCATATGCAAGGAAttcatgaaaagaaaaaaatgtatgtcTGCGAGGTATGTGGAAAAGGAACGAGTACACAAGATGGTTTAAGACTTCATAAGTTGATTCATACTGGAGAAAGAAAGTATATTTGTGAAATATGTGGTAAAGGATTTACAACAAGCGGTCGgaCGAAAATCGAACTTCTACAAAATCTTACAATAATTGAACCAGTTACAAGTAATATAGTATTGACCACCGATGTACCTACACATGAATGTCCAATATGCAAAAGAAAATTTCGAATCTGGCAGACACTTCAAagtcataaattttactacaacGATAAACCTGAGGAACATTTACTACTTTTAAATTATCCTGAAAATGGTTTCAAATCTGTAAAATGCAGTAAATGttccaaagtttgtaaaaatgaagagtatttaaaaatgcacattGAACACGAACACAACAAAATATGTTGGCGTTGCGAAGTTTGTCTAAAGGAGTTTACAGATGGCGCCCAATTTCTTCAACatgaaaaaattcataatactgaTTATAAAAGGCCTCAATTTAAGTGCAGTAAATGTGAAAAGTTATTTACTtcgcaaagaaatttaaatcttcACATTAAGGGAGTCCACGACCCACTTGAGGTTGTTTGCGAAATTTGTGGTAAAGAATTTCATACAAAAAGTGGATTTAGAAATCATATGCTTTCACATACAacagagaaaaaaattatttgtgaaGTATGCGGTAAAGGATTTACTACTCCTGGAAGGTTAGATCAACATTCTGTGGTTCACACTAAAATAAAAAGACATAAATGTAAACTTTGTGATAAATCTTACACACAAAGTTCTGCTTTGAATATACATATTAAAAGTAAGCACTCTAAAGTGCCTAGACATGAATGTATTATTTGTTCAAGAAAGTTTGTTACCATTTCATTcttaaagtatcatttaaaaTCACATCATAAATTCTTAAAAGCATAG
- Protein Sequence
- MDEPFYFPLDVEDDNNQILLFNIKGDEIKSEHDDHNYYRENQLAQEINPQSKDDHTCKLCSKIFDNEHDLITHFASHNQYQCPKCEMSFPKIAQLGLHFQNHHNSKIFTCHLCKFETKRKFSFIPHMKRHAEEELKYHCNQCGKKYLCRANFNDHLKKHDSEGHIYICEENLSANNAILCAYRTIIEAIDRRERVAGVYFDFSKAFDTIDHALLISKLAHYGIRGNAGKWVESYLSNRSQSVSWNNQLSSSKKVFSGVPQGGKITHYADDTSVIVQGEDNKMVKDSINLSLVLNISNCVAINFSIAKVSQELPLKCTKVCRSEEELKRHVHHKHKNLRWNCDLCSKDFADPYALKSHQKTHKPDYQKPEHKCELCFKTFSAKNGLKIHMDGVHKLTKPICDICGKQFNSPNGLRVHMFSHTGVKKHVCEAHQNTHNPDYQKPQFTCEICSKSFASNKTLRIHMQGIHEKKKMYVCEVCGKGTSTQDGLRLHKLIHTGERKYICEICGKGFTTSGRTKIELLQNLTIIEPVTSNIVLTTDVPTHECPICKRKFRIWQTLQSHKFYYNDKPEEHLLLLNYPENGFKSVKCSKCSKVCKNEEYLKMHIEHEHNKICWRCEVCLKEFTDGAQFLQHEKIHNTDYKRPQFKCSKCEKLFTSQRNLNLHIKGVHDPLEVVCEICGKEFHTKSGFRNHMLSHTTEKKIICEVCGKGFTTPGRLDQHSVVHTKIKRHKCKLCDKSYTQSSALNIHIKSKHSKVPRHECIICSRKFVTISFLKYHLKSHHKFLKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -