Sbim015986.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- ZFX
- Assembly
- GCA_963971135.1
- Location
- OZ020181.1:53831381-53834943[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.6 3.9e+02 3.1 0.5 3 23 165 186 164 186 0.91 2 17 0.00064 0.096 14.5 0.6 2 23 215 236 214 236 0.95 3 17 7e-06 0.001 20.7 0.8 1 23 242 264 242 264 0.97 4 17 3.8e-05 0.0058 18.3 3.9 1 23 269 291 269 291 0.98 5 17 0.004 0.61 12.0 1.3 3 19 300 316 299 316 0.96 6 17 8.8e-07 0.00013 23.5 2.8 1 23 383 405 383 405 0.98 7 17 0.013 1.9 10.4 0.6 1 23 410 432 410 432 0.96 8 17 0.0018 0.27 13.1 0.3 2 19 437 454 436 454 0.96 9 17 8.4e-07 0.00013 23.6 2.1 1 23 523 545 523 545 0.98 10 17 0.0082 1.2 11.0 0.4 1 23 550 572 550 572 0.96 11 17 0.0058 0.88 11.5 0.2 2 19 577 594 576 594 0.96 12 17 1 1.5e+02 4.4 3.7 1 23 632 654 632 654 0.97 13 17 7.4e-07 0.00011 23.7 1.5 1 23 660 682 660 682 0.99 14 17 0.00015 0.023 16.4 1.0 1 23 690 712 690 712 0.97 15 17 1.2e-05 0.0017 20.0 2.1 1 23 718 740 718 740 0.97 16 17 0.00066 0.099 14.5 0.1 1 23 746 768 746 768 0.97 17 17 7.7e-06 0.0012 20.5 2.8 1 23 774 796 774 796 0.98
Sequence Information
- Coding Sequence
- ATGAATGCGTCATGTAGAGCCTGTTTATCCCAGGAAGTTCATTTATACACCAATGAAGAAactgaaaataatgaaattttatcgGGGTTGTTGAACACTTTTACAGCCCTAACAGGCTTCGAGACTCATCCTATCTTCCTTGGAGGTGTCTTTAATTTATGTGAACCCTGTGAAGCGAAGCTTAAACTTTGTAATGAATTTCGAGAAATGTGTTTACAATCTTATACTCAACTCGGGCAACAATTCTTGAAAGTAGAAGTGGATAACGATGAGGAAATTGccctggaaaattttaatatttttgaattgagTAAAGAGGAATTTGGTGATTCCGTTGTCAATGATGAAATTGAAACGGTAGAAAATTTTGATTGCAGTCATGAAGATCAAGTTGCTACGATTAGTAGTAATAAACGTTTGGAAAAATATTCAGCAGAAAGCATAAAGACATTAATtgatgaattaaataataaattaagtgaaTTAAGAATGTGCGTCAGCTGTAATTATATTGCCGTAAAATGTGTAGATCTTCAACAACATATGGTTAAAGAACATCCaaacttaAACGATAATTGGTGTAATAAATGCAATCAACTATTTGACCCTTCACTAGAGCATGAACATCGGGAGAATATTTTGATATGTAAATTATGtggaaaaattgcaaaaaatcgtTCACACCTTTTAATTCATTACCAAGCACATACcgataatCAAAAATATGATTGTGATCAATGCGATAAATCGTACGTTACAAAAAGTGGTTTACAAACGCATTATAATTTGCATACGAATGTAAGTtacaaatgcaaattttgtCCTCAAACTTACAATCGTTCAACTTCCTTACGAAGGCATTTAACTAAACACACGCAAGGAGACTTACAAAACGattgtaaaatttgcaataaatcatttaataacCATGAAGATTTGGATAACCATGATTGTGAAGTTGTAAATCCAAATGATGTGTCTGAAAGTAGTTTAGTAGAAacAGATCCTGTTATCAATGAGGAAATTAAAATGGTAGAAATTTTCGATACTAAAATTGTAAAACATGAAGATATAGTTTCGACGGTTACTAATAATAAAcgttcagaaaaaaattctaaagaaattgctttaaaaggtggTAAAAAATTCTCTTGTGATAAATGCGATAGATCATACACtacaaaaagtaatttaaatgaGCATTATAAATCACATATCATTCAAAGTTACGCATGCCAATTTTGTCCTAATACCTACAAACTTGAGAGATCTTTACGAAGGCATTTACTTGCACACTCTCATCAGGTAGAATGTGAAACTTGCAAGAAAAAGTTTGACAACCAAGAAGATTTGGAAAACCATGACTGCATCAATGAAGTTATAAATCCAAATGAGGTGTCTGAAAATAGTTTGGTAGAAacaGAAGCTGTTTTCAATGAGGAAATTGAAatgaaagaaatttttgattctaaaattGCAAATCATGAAGATAAAGTGTCGATGATTACTAATAATCAGGATTCGGACACAAATTCTAAGGAGAGCGCTTTAAAAggtggTAAAAAATTCTCTTGTGATAAATGCGATAAATCATACACTACAAAAGGTAATTTAAATGAGCATTATAAATCACATACCATTTCAAGTTACCCATGCCAATTTTGTCCCAATACCTACAAACTTGAGAGATCATTACGAAGGCATTTAATTGCACACACTCATCAGGTAGAATGTGAAACTTGCAAGAAAAGGTTTGAAAACGAAGAAGATTTGGAGAACCACGACTGCACTATtcaacctaaaaatttaaacaaaatgccTGAAAATACTCCAGCTAAATCTTCAGTTGCGAATCTAAAAATGCATATGGATATTCATACAGGGGTAAAACCGTTTAAATGCCGCCACTGTGATTTCAGAACGAGATTAAAAGATATATTAGTTAGTCATGAACGAAGGCACACAGGAGAAAAACCATTTCAATGTAACATTTGTCAAAAAaccTTTAGTCAACGTGGTAGCTTAAGTTTACATGTCAAAACCCACCAAGGAGACTTAGGAAAACCGTTCCCTTGTCTACTTTGCGAAAAACGATATGTTCGTAAAATAGATCTTCAATATCATATGCGTTTTCATACAGGTGAGAAGCCTTTTCGTTGTAACCTTTGTCCAAAGGCTTTCAAGCGTAGCATTCATTTGAAATATCATCTCGATGTTCATAGCGATGCGCGACCATACATTTGTGCTTATTGTGGTGAAGGCTTTAAAGCAAGAAATACTTTAAAGAATCATGAACTTATACATAAAGGAGAAAAGCCATATAAATGTGAAATTTGTAAGTATGATTTTCGTAAAGCAGGTCACCTGAAAGTTCACATGAAACAACACAATCAATAA
- Protein Sequence
- MNASCRACLSQEVHLYTNEETENNEILSGLLNTFTALTGFETHPIFLGGVFNLCEPCEAKLKLCNEFREMCLQSYTQLGQQFLKVEVDNDEEIALENFNIFELSKEEFGDSVVNDEIETVENFDCSHEDQVATISSNKRLEKYSAESIKTLIDELNNKLSELRMCVSCNYIAVKCVDLQQHMVKEHPNLNDNWCNKCNQLFDPSLEHEHRENILICKLCGKIAKNRSHLLIHYQAHTDNQKYDCDQCDKSYVTKSGLQTHYNLHTNVSYKCKFCPQTYNRSTSLRRHLTKHTQGDLQNDCKICNKSFNNHEDLDNHDCEVVNPNDVSESSLVETDPVINEEIKMVEIFDTKIVKHEDIVSTVTNNKRSEKNSKEIALKGGKKFSCDKCDRSYTTKSNLNEHYKSHIIQSYACQFCPNTYKLERSLRRHLLAHSHQVECETCKKKFDNQEDLENHDCINEVINPNEVSENSLVETEAVFNEEIEMKEIFDSKIANHEDKVSMITNNQDSDTNSKESALKGGKKFSCDKCDKSYTTKGNLNEHYKSHTISSYPCQFCPNTYKLERSLRRHLIAHTHQVECETCKKRFENEEDLENHDCTIQPKNLNKMPENTPAKSSVANLKMHMDIHTGVKPFKCRHCDFRTRLKDILVSHERRHTGEKPFQCNICQKTFSQRGSLSLHVKTHQGDLGKPFPCLLCEKRYVRKIDLQYHMRFHTGEKPFRCNLCPKAFKRSIHLKYHLDVHSDARPYICAYCGEGFKARNTLKNHELIHKGEKPYKCEICKYDFRKAGHLKVHMKQHNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -