Sbim002313.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020180.1:282394-287737[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.5 6.8e+02 2.4 1.2 2 19 51 67 50 72 0.87 2 18 0.002 0.29 13.0 0.2 2 23 78 100 77 100 0.96 3 18 0.065 9.7 8.2 0.2 3 23 108 129 106 129 0.95 4 18 3.4e-05 0.0052 18.5 3.4 2 23 134 156 133 156 0.96 5 18 2e-05 0.0031 19.2 0.9 1 23 161 184 161 184 0.89 6 18 0.00018 0.028 16.2 1.3 2 23 192 214 192 214 0.95 7 18 3.6e-05 0.0054 18.4 0.4 2 23 220 241 219 241 0.96 8 18 0.00075 0.11 14.3 3.1 1 23 247 269 247 269 0.92 9 18 4.5e-06 0.00068 21.3 1.0 1 23 275 298 275 298 0.96 10 18 8.7e-05 0.013 17.2 0.7 2 23 404 426 403 426 0.96 11 18 0.05 7.5 8.5 0.2 2 23 433 455 432 455 0.95 12 18 0.0023 0.35 12.7 1.3 2 23 460 482 459 482 0.96 13 18 1.7e-06 0.00025 22.6 0.4 1 23 487 509 487 509 0.98 14 18 0.0002 0.03 16.1 0.4 3 23 518 539 516 539 0.95 15 18 2.5e-05 0.0037 18.9 0.7 1 23 544 566 544 566 0.97 16 18 1.9e-05 0.0029 19.3 2.8 1 23 572 594 572 594 0.93 17 18 5.9e-05 0.0088 17.8 5.2 1 23 600 623 600 623 0.97 18 18 0.00014 0.02 16.6 2.5 1 23 629 651 629 651 0.98
Sequence Information
- Coding Sequence
- ATGATCGCCTCGATAAAACTTCCTTACCTCGGAGGGATTGTCATCTTACCGGAATGCCTTCCAAAAGGAACAGAAATAGTTAATAGTTATACAAACAACACTACAATAGAATATACTGGGTTCATAAAGCCCGAAATGAAATACGTAGTGAAATGttctttatgtttaaaatattttagcccTAGAACCTTTAGAAGCCATTTCGGAGATAATCATAGAGAACTTACTATCCAGTGTGAAGAATGCCTAAAAGTTTTTACTTTTATTGATGATTTCAACTATCATTTAATTACTTCACATCCTGAAACTTCAAACAcaatttgttttgtttgtaCTAACGAATTTGaaacattagaaaaattaaaagaacacTTACTAAGTATTCATAGCGATAAAATTAAGTGCGACGAATGTTCTAGGACTTTTAAAAGCAATCATAATCTAGCACAACATAAAAAACGAGATCATTTATTAGAACGCTTTCCATGTGAAGTTTGTggcaaaaaattcaaatatcagGTATATTTACGTAAACATAATATTCTCCAACACAACTACAAGGCCGcaaaagaaaaatgtaaaatttgcaggaaggaatttgatacaaaaaaaggtttaagAGTACACCAAGTTAAGATTCATGATTTAAAAAGATTAACATGTCACTTATGTGGAAAGGTTTTAATATCAGATTCAAATTTAGAAAAGCACTTACTTATTCATAGGAACGTAAAGAGATTCATGTGCGACACTTGTGGCAAATGtttcaaaacaaaatatattctCCGTAATCACTCGGTAGTTcacacaaaagaaaaaaaatacgcTTGTACTTTGTGCAACAAAAGTTATACGTACAAAGACAGTTTAATATCACACCAAAGAAATGTTCACAAGAAATATGATTGTACAATTTGTAGTAAAAAGTCAATAAATTGTTTGGAGTCATGTGATGGAGTTGTAGTTTCTAATACAAATATAATCAAGACGATAGAACAGCCTTACCTCGGAGGGATTTTAATCTTAGTGGATCGCCTTCCAAAAGAAGCAATCATAGTTCATAATTACATAAAACATAGTGGAAAAGAAACTACTGGGCACATAAAACCAGATATGAAATTCGTTCTGAAATGttctttatgtttaaattatttttccactAGAAGCTTTACAAGCCATTTCAAACATAAACATAGAGAACTTACTCTCCAGTGTGAAGAATGTTCTAGAGTTTTTACTTTCGTTGATGATTTAAACCATCATTTAATTACCTCACATCCTCAAGCTGCCCATACAACTTGTTTAGTGTGTACCAACGAATTTGAAACATTAGAAATGTTAAAAGAACACTTACTGAGTATTCATGGCAATAAAATTAAGTGCGATGAATGTTCTAGGACTTTTAAAACCTATTTTGAAATCGCAAATCATAAAAAGCGAGATCATTTATTAACACGCTTTTCATGTGAAATTTGTGATAAAATATTCACAACTGATGCATATTTACGCTTACATATGCGCCTCCACAGTAACAAGCCCACAAAAGTAATATGCGAAATTTGCCAAAAGCAGTTTGTTTCAAAAGGCGGTTTAAGACAACATAAACTTAAGTCTCatgatttaaaaagatttatatgTCACCTATGCGGAAAGGTTTTAACATCAGATTCATCCTTAAAAAATCACTTACTTATTCACATGAACGTAAAGGAATTCATGTGCGACACTTGTGGCAAATGTTTCACCACAAAAACTCTTCTCCAAACGCATTCGGTAGTGCATACAAAAGATAAAAAACATACTTGTACATTGTGCAACAAAAGTTATACGCAAAGGGGTAGTTTAACATCACATCACAGAAGTGTTCACACGAAAGATTTGAGATATGATTGTACAATTTGTAGTAAAAAGTTTGTTACTAAAACTTTAATGAAGTATCActtaaaatctcataaaataagtgaacgagaATCAGAAGATTtaactaatttataa
- Protein Sequence
- MIASIKLPYLGGIVILPECLPKGTEIVNSYTNNTTIEYTGFIKPEMKYVVKCSLCLKYFSPRTFRSHFGDNHRELTIQCEECLKVFTFIDDFNYHLITSHPETSNTICFVCTNEFETLEKLKEHLLSIHSDKIKCDECSRTFKSNHNLAQHKKRDHLLERFPCEVCGKKFKYQVYLRKHNILQHNYKAAKEKCKICRKEFDTKKGLRVHQVKIHDLKRLTCHLCGKVLISDSNLEKHLLIHRNVKRFMCDTCGKCFKTKYILRNHSVVHTKEKKYACTLCNKSYTYKDSLISHQRNVHKKYDCTICSKKSINCLESCDGVVVSNTNIIKTIEQPYLGGILILVDRLPKEAIIVHNYIKHSGKETTGHIKPDMKFVLKCSLCLNYFSTRSFTSHFKHKHRELTLQCEECSRVFTFVDDLNHHLITSHPQAAHTTCLVCTNEFETLEMLKEHLLSIHGNKIKCDECSRTFKTYFEIANHKKRDHLLTRFSCEICDKIFTTDAYLRLHMRLHSNKPTKVICEICQKQFVSKGGLRQHKLKSHDLKRFICHLCGKVLTSDSSLKNHLLIHMNVKEFMCDTCGKCFTTKTLLQTHSVVHTKDKKHTCTLCNKSYTQRGSLTSHHRSVHTKDLRYDCTICSKKFVTKTLMKYHLKSHKISERESEDLTNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -