Sbim006600.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenus bimaculatus
Gene Symbol
-
Assembly
GCA_963971135.1
Location
OZ020180.1:61649185-61650965[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.5e-07 2.3e-05 25.9 1.5 1 23 220 242 220 242 0.98
2 12 3e-06 0.00046 21.8 7.4 1 23 248 270 248 270 0.98
3 12 2.3e-05 0.0035 19.0 0.4 1 23 276 298 276 298 0.99
4 12 3.9e-06 0.00059 21.4 0.4 1 23 304 326 304 326 0.98
5 12 0.00024 0.036 15.8 1.4 1 23 332 354 332 354 0.97
6 12 0.00043 0.064 15.1 9.2 3 23 362 382 361 382 0.99
7 12 2.4e-07 3.6e-05 25.3 2.1 1 23 387 409 387 409 0.98
8 12 2.6e-06 0.0004 22.0 1.8 1 23 415 437 415 437 0.99
9 12 4.6e-06 0.00069 21.3 0.9 3 23 446 466 444 466 0.96
10 12 9.9e-05 0.015 17.0 1.2 1 23 472 494 472 494 0.97
11 12 4.6e-08 6.9e-06 27.5 4.0 1 23 500 522 500 522 0.99
12 12 1.4e-05 0.0022 19.7 0.8 1 23 528 550 528 550 0.99

Sequence Information

Coding Sequence
atggaaaataattttaatttatctgaaTGCTGTAGAGCGTGTTTAAGAGTGGAATGCAATCTCACTATGTCAAATACACAAGACACAGACACAATTAAATTATGCGACAAATTAACTACTTGTGTATCGGAAATTaCATGGAATAAAGATGCTTATACGGCATTAATATGCGCCAATTgtattgaaaaattaagaatAGCTTATGATTTTCGAATACAATGTTTACAATCGGATAATAATTTACAACAGTATTTGGGGCACGGTAAACTTTCAGATTTAACAGGAGAAAATTTTATGCCTGTTACAGAGCTTACGATTGGTAACAATATAAGTTACAGCGATGTTGAAAATCAATTAGTGTCTGATAAATTGGAAGCTGatagtagtttatttttaaatgatttaatagAAAGTGCCACCTTAACAAAAATAACTAATGCTAATACAGTGACGAATACTAATTTATCTAGATGTGAATCGCCTCAGCAAGTAGTTGCTTCAGAAAGTAATAAAGTTGTTGCAAAGGCTGTTGTTGGATTTCGATCGATTAAAACTCAAACGCAACCACTACCGCAATATCCTATGTTAACTCCAGCAGCTGCTCGCTTAGAAGCAATGCAAAATAAAACAACTATTTTAGTTGAAGATCCTTGTAAACACACCTGTGAAGTATGCGGTAAAAAGTATgctaaaaatgcaaatttaaaaatacatatgaGGACTCATACCGGTGAAAAACCATTTGAATGTAAATAttgtgaaaaaaaattctaccaTTCCTCACATTTACGGGAGCATATTAGGCGCCATACAGGAGAAAAACCTTTTCAATGTACAGTGTGCTTAAAAAGATTTACAATTACTGCTGAATTAACTGTACATATGAGAATTCACACAGGTGAAAAACCATACGCTTGTAAATCCTGTGATAAACGCTATATAAAGGCTTCGGATTTACAAGTACATATAAGGTCACATACCGGAGAAAAACCATTTGCTTGTACATACTGTGATAAAAAGTTCACAAGTGGTTATATACTAAATTCACATTTAAAAACTCATACAGGAGATCGGCCGTGGCTATGCCATTACTGTTGTAAGTCATTTACTCAATCATCTCATTTAACGGTACATATGAAGAAGCATACTGGTGAGAAATTTGTgtgtaaaatttgtaatcaAGAGTTTACTCACTCCAGTCAACTCACAATTCATATGCGTGAACATACCGGAAAACAACCCTATAAATGTACGATTTGTGATAAAGTTTGTAATTATTCAGCAGAATTACAAGTACACATGACGAAACACACTggagaaggaaaaaaaattaattgttccaCATGCAATAAAGAGTATTCCACAGTATATTCTTTGCAAAAACATATGCGTGTTCACAATGATGACAATTTATTTACTTGTCCTATTTGTGATCGatctttcaataaaataactGCTTTGGATAAACACACTCATATACATACAGGAGAGCTGCTGTATAAATGCGAAATTTGTGGCAAATgttttgcacaaaatttttcTCTCAGTAAGCACATGAGGAAACATACAGGGGAAAAGCGATACACCTGCACTATCTGCAATAGGAATTTTGCAGCAAGTTCGCAACTCtcagatcatttaaaaaaacataaaaagtatgttactttataa
Protein Sequence
MENNFNLSECCRACLRVECNLTMSNTQDTDTIKLCDKLTTCVSEITWNKDAYTALICANCIEKLRIAYDFRIQCLQSDNNLQQYLGHGKLSDLTGENFMPVTELTIGNNISYSDVENQLVSDKLEADSSLFLNDLIESATLTKITNANTVTNTNLSRCESPQQVVASESNKVVAKAVVGFRSIKTQTQPLPQYPMLTPAAARLEAMQNKTTILVEDPCKHTCEVCGKKYAKNANLKIHMRTHTGEKPFECKYCEKKFYHSSHLREHIRRHTGEKPFQCTVCLKRFTITAELTVHMRIHTGEKPYACKSCDKRYIKASDLQVHIRSHTGEKPFACTYCDKKFTSGYILNSHLKTHTGDRPWLCHYCCKSFTQSSHLTVHMKKHTGEKFVCKICNQEFTHSSQLTIHMREHTGKQPYKCTICDKVCNYSAELQVHMTKHTGEGKKINCSTCNKEYSTVYSLQKHMRVHNDDNLFTCPICDRSFNKITALDKHTHIHTGELLYKCEICGKCFAQNFSLSKHMRKHTGEKRYTCTICNRNFAASSQLSDHLKKHKKYVTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-