Sbim031287.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020183.1:50942060-50946816[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.8 2.7e+02 3.6 0.2 2 17 53 68 52 69 0.91 2 16 1.4e-05 0.0021 19.8 5.6 1 23 121 143 121 144 0.96 3 16 4.5 6.8e+02 2.4 0.5 2 10 147 155 146 167 0.74 4 16 6.8e-05 0.01 17.6 0.7 1 23 215 237 215 237 0.99 5 16 1.2e-05 0.0019 19.9 6.6 1 23 243 268 243 268 0.98 6 16 2.9e-05 0.0043 18.7 2.5 2 23 286 308 285 308 0.96 7 16 4.1e-05 0.0061 18.3 2.5 1 23 371 393 371 393 0.95 8 16 0.0019 0.29 13.0 1.0 1 23 399 422 399 422 0.94 9 16 5.1e-06 0.00077 21.1 1.7 1 23 427 449 427 449 0.99 10 16 6.3e-05 0.0095 17.7 2.8 2 23 460 481 459 481 0.96 11 16 2.6e-07 4e-05 25.1 1.3 3 23 490 510 488 510 0.96 12 16 1.6e-06 0.00024 22.7 1.6 3 23 522 542 520 542 0.96 13 16 0.00021 0.031 16.0 5.1 1 23 548 570 548 570 0.99 14 16 3.2e-05 0.0047 18.6 1.7 1 23 576 598 576 598 0.96 15 16 5.7e-08 8.6e-06 27.2 0.2 1 23 604 626 604 626 0.99 16 16 0.00037 0.056 15.2 0.1 1 23 632 656 632 656 0.91
Sequence Information
- Coding Sequence
- ATGAATAATATTTGTCGGTCTTGTATGAATGAACAAAGTACTATGCGTAGCTTAAAGGAATTTTTTTCTTCGCACAGGGATAGTATAAAATTAGTGGATATGATAACAGCTTGCACATCTATCGAAGTTAATTTTAACGATGGGCTTCCTAGTCAAGTATGTAATCACTGTGAAACCAGGCTTGTTGACGCATATAACTTTAAGCAACAATGCGAGGAAAGTGATGTCAAGCTGCGTAAACTCATGAGATCAGAAGATTCAAACTTAGATTATGAATCAAGCGATGACGATTTAAATAACGAGCTTCCTAATGACGATGAAGACTGGGATCCCAGCAAAGaggaaaataatttcaaaaactacaagTGTCCCCATTGTGATAAAGAATTTACAACTGAAAAACGGCTTAATTCACATTTGAAATCACACCATTTTCAGAAATGTAATATTTGCAAGAAAAAAATAGCAACTTCCTTATATGATAAGCATGTAGAGAGTCACTCTGGtgagtttgaaaattttgtagcgCATGAAACGGGGTCAACAGGTATGATTGAAAAGGTGAAGAAGGAGATTAATGAAGATGATGGTTTTAATGGCACAAATTGGGAGATGAAGGAAAATGTTTCTAAAAAGAAACATTTCCAATGCGAAATATGTAATAAAGTTCTAACGACTTATATAggcttaaaaattcataaaagaaGACATAGTGGTATTAATTTGTATAAATGCCAAGTGGATgaGTGCTCAAAATCTTTTACTAAATGTAGCCATTTGAAACGTCACATGAAATCTATGCACAAGGTGGAATATAAGCCAGGACAAAATATCCCGAGTGATAAGAAgGAAATGGTGTGTGAATTCTGCGATCGTGTTTTTAAgtatcaaaaaagttttaatcatCATATGCTTACTGAGCACGATGTAAAGGCAGCTGATAACGAAGATACTAAGGATGTTGAGATGTTAAACAATTCCTTTGATCCAAGTATACTTGAGCCCAATATTGAAATTACAGGTGAAGATGAAAAAGATGAAGAATGTTCTCTTTCGAATAAATCAGGAGAAGATATTATCGAAGAAGAAAATCAGTACCAGAGACCAAAGCATGCATGCCATGTTTGTAACGCAGAATTTGCACGTCCTAATCATCTTACAAGACATATGATTTTACATAAGGCTATCTTATTGTTTAATTGCAACTTATGTACTAATTCTTTTGCAACACAAGAACATCTAGATAATCATGTACAAGAAGAACACATTAATAAGCCTTATACATGCACAATTTGCAAAAGAGGTTTTTCAAGAGGCGAGCATTTAATTCGACATTTAAAAGTACATTCAGCTGAGGAAACAACAGAGGACCAATTGCGTTGTTCAGTATGTGAAAAGGATTTTAGtagGTTTGATCATCTTTCGCGACATTTGAAACTGCATCTTCAAGAAGACAAACGTCATTTATGTTCCATTTGTGGAAAAGGATTTAACAGGGCTGATAACTTAAAAACACATCAACGTATACACTCAGCAAACAGGGAACAGGCGAAATTGCATCTTTGTGTGTACTGTGGTAAAGAATTTAACAATTCCAGCAACATGattgtaCATATGCGAAGACATACTGGTGAGAGACCCTATAAATGCTCTCAATGTGGAAAAGGTTTTCCAAGATCACATGACTTAAAATGCCATGAACGCACACACTCGGGAGAAAAACCATACCTTTGCACCCTATGCGgcaaatcatttaataaaagcaataaacttCTTCGGCATTCTAGAGTTCATACTGGTGAACGTCCATATGTCTGCAACATATGTGGAAGAGCTTTCACTCAATCAAATGATTTAGCCCTCCATATGAGGAGGCACACGGGATCACGCCCTTACGCCTGTGGAGTATGCCCCGCACGATTTATCCAATCAGGTCAACTTAAGAACCATAGAAAAAGCTCTGGTCACTGGATGGAAGTGCAGCCTGAATTAAAAGGCGGGCATCGTGTTGAACCTGTAGTTGTTTTAACAGAATCGACAccgattaaatttaaaacgcaTGTTCCAGATGAAGATAAAGAAAAGTCAACAGATGAAAATGATTACTCCATGCAAGACAACACCGACATTGAAAGCGTAGAGGTTATAAAAGATGTTAAAGGAAATCCTGTTTTGAGTGTAATTAATAGTATAACCGCTGAAAATTCCTTAGTCTTAGGAAACGGCACGACAAGTACTATAAATAATGgaacttttattattcaaagtggcaatccaaaaatgaaaattgaaatCGAAGGTGATGGGAAGTTAAAAATAAGTCCAAGTACATTCCAAACTTTTTCCGTAGAAACAAATGAAAATGCTACATTTACAGAAATGGGTTCTTTTCATTATCAAACTTACAGTTAA
- Protein Sequence
- MNNICRSCMNEQSTMRSLKEFFSSHRDSIKLVDMITACTSIEVNFNDGLPSQVCNHCETRLVDAYNFKQQCEESDVKLRKLMRSEDSNLDYESSDDDLNNELPNDDEDWDPSKEENNFKNYKCPHCDKEFTTEKRLNSHLKSHHFQKCNICKKKIATSLYDKHVESHSGEFENFVAHETGSTGMIEKVKKEINEDDGFNGTNWEMKENVSKKKHFQCEICNKVLTTYIGLKIHKRRHSGINLYKCQVDECSKSFTKCSHLKRHMKSMHKVEYKPGQNIPSDKKEMVCEFCDRVFKYQKSFNHHMLTEHDVKAADNEDTKDVEMLNNSFDPSILEPNIEITGEDEKDEECSLSNKSGEDIIEEENQYQRPKHACHVCNAEFARPNHLTRHMILHKAILLFNCNLCTNSFATQEHLDNHVQEEHINKPYTCTICKRGFSRGEHLIRHLKVHSAEETTEDQLRCSVCEKDFSRFDHLSRHLKLHLQEDKRHLCSICGKGFNRADNLKTHQRIHSANREQAKLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCSQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGSRPYACGVCPARFIQSGQLKNHRKSSGHWMEVQPELKGGHRVEPVVVLTESTPIKFKTHVPDEDKEKSTDENDYSMQDNTDIESVEVIKDVKGNPVLSVINSITAENSLVLGNGTTSTINNGTFIIQSGNPKMKIEIEGDGKLKISPSTFQTFSVETNENATFTEMGSFHYQTYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -