Sbim016034.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenus bimaculatus
Gene Symbol
-
Assembly
GCA_963971135.1
Location
OZ020181.1:54268131-54272603[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.003 0.45 12.4 2.5 1 23 166 188 166 188 0.98
2 19 0.082 12 7.9 3.7 1 21 193 213 193 214 0.91
3 19 0.026 3.8 9.5 6.7 1 23 246 268 246 268 0.98
4 19 3.5e-05 0.0052 18.5 5.4 1 23 273 295 273 295 0.98
5 19 0.00087 0.13 14.1 0.8 1 23 310 332 310 332 0.97
6 19 9.9e-05 0.015 17.0 0.5 1 22 337 358 337 358 0.96
7 19 2.5e-07 3.7e-05 25.2 1.5 1 23 365 387 365 387 0.99
8 19 1.4e-05 0.0021 19.7 2.5 1 23 393 415 393 415 0.96
9 19 0.00018 0.027 16.2 1.7 1 23 421 443 421 443 0.98
10 19 0.0072 1.1 11.2 0.1 1 23 513 535 513 535 0.97
11 19 0.0002 0.03 16.1 0.3 1 23 540 562 540 562 0.98
12 19 4 6.1e+02 2.5 3.6 1 23 584 606 584 606 0.96
13 19 0.0015 0.23 13.3 4.4 1 23 611 633 611 633 0.98
14 19 6.2e-06 0.00094 20.8 1.0 1 23 639 661 639 661 0.99
15 19 1.3e-07 2e-05 26.1 0.8 1 23 667 689 667 689 0.96
16 19 0.00031 0.046 15.5 0.7 3 23 697 717 695 717 0.95
17 19 7.7e-05 0.012 17.4 2.4 1 23 723 745 723 745 0.99
18 19 1.4e-06 0.00021 22.9 4.0 1 23 751 773 751 773 0.98
19 19 7.3e-05 0.011 17.5 0.4 1 23 779 801 779 801 0.97

Sequence Information

Coding Sequence
ATGGATAAATTAGCGCAcgttaatttagaaaaagtttGCCGTCTTTGCTTATTACAAACCAATACAGTCCACACAATATTCACAGAAGTCACCACTGAAACGTTTACGTTGAACATACAAAAACTTCTTACAAAAATAGTTGATATCGAATTGACAGATGCTGAGGAACTACCGAATGTTGTTTGCGAAAAGTGTTTACAATTCCTCGTTGAAATATCGAGGTTTTTACAATTATGCCTTGATTCGGATCGAGTTATTAAAGCTTATTACACGGAATTGAAGTTGCAAGAAAATGAAGTAAAAGTTAATGTTAAAGAGGAATTCTTTGAAGATGAAGACTATGATAATGAAGACGATGACAATGAAGATGAAGATAATGTTGATAACGGATATGATTTAAGTGAAAGTGAAAATACACCAGAAGAGGATGCTCGAGATAATTCTAAACCAGAATTCTCATATTATTTACAAACACAAGAATCCGGACAAAAaGAGTATGTTTGCAATTTATGCACGTTACATTTTATTACCTTGAATGAATTTAGATCGCATATATTTACGCATGGGGATGAACCGTTCATATGTAACAGCTGCAAAAAATCATACAAACATTACCATAATCTCTGGTTTCATATTAATAAACGTGTTAACGAGAAACCGAATAATGATTCTAACTCGACTTCAAAAAAgggtttaaaatattatttacaagtaCAAGAGTGTGGACAAGAAGTGCACGTTTGTAATTTATGCTCGGAACACTTTATTGAATCgtgcaattttaaaaaccacttaaataCACATGGGGAAGAACCGTTTGTTTGTAACCAATGCAAAAGATCTTTTAAAACGTACCAGCATTTAattaaccatttaaaaaaacatttaacttTAACAGACAGCCAAATTCAGCTGGAAGATGAAggGTACGCTTGTAATTTATGTAGCGagcagtttaaaaaatttaaggatttaaaaaatcacttggCTGTGCATGGAGAAAAACCGTACGCTTGTAACAATTGTAAAAAAGGTTTTAGAAATTATACGTTACTTATGGTTCATATACGACGATACACTAGTTTAGTTCGATATAAATGTGAATTATGTGATAAAAGTTATAGAGAAAAATCCAGTCTAACCATTCATTTAAGAACTCATCGTGGAGAACGACCCTACTTATGTTCCACTTGTGGAAAATCTTTTACgtcaATAACTGAATTAAAAGTACACCACAGATCACACCTAGAAGAAGGAAGTCACGTCTGTAATTATTGTGGTGTAAAATTAAGATCAAAAGGATCGTTTAATATACATTTAAGATCCCATACTGCTTATTACAATGAATTAAAACTGCAAGAAAATAAGCAGCAAGatgatgatttattaaaattttgcgatGATGAAATTTGTGATGATTTTATTGAAGATTCAAGTGAAGAAGATGATAATGTGGATTTAGATTTTCCAGTAGaggttgaaaaaaaatctccgttgaaatattatttagaaaCACAAGAAACGGGAGAAAcggCATACGCATGTAATTTATGTCCGGAAAGTATTATTGACTCGAacgattttgaaaatcatttgaATAACCATGGAAACGAGCCTTACGTTTGTAATGATTGTGAAAGCGAATTTAAATCTTATAAAGAACTGGAAATTCATATAAaagaacataaaatttataaaaataaacctggTAAATATTATAGGGAAATAACGGAAGACGGGGAAGAGAGGTACACTTGCAATATATGCATGGAAAAGTTTGGTTGctataaagatttaaaaactcatttgTATTCACATGGAGATGAACCGTTTGTATGCAATgattgtaaacatttttataaaacgttTAGACAACTTATGATACATGTAAAAACACATATTAGTGTAGAACGATTTAAATGCGACTTCTGTGATAAAAGTTATCAACAAAAAGGGGGTTTAGTAATTCACCAGCGAACACATCTGGGTGAAAAACCATATTTATGTTCTATGTGTGGAAAATCTTTTATCTCAAAATcggatttaaaaatacatttacgaTCGCATTCTGACGAAAGAAAACATTTATGTACATACTGCGGAATGAAATATAAATCTGCTGGCTCGTTAATAATACATTCAAGGATTCATACTGGCGAAACACCTTATAAATGCAGTCTGTGCATTAAGTCATTTAGAAGCTCAAACgcattaaaaaaacatagatTAACGCACACCAATTTGAGACcgtttaattgtaatttatgcGATAAAGCTTTTAGAACAAAAACTCACCTAAATACGCATATTAAATCTCACTCAGGCTGCAGGCCATACACTTGTGAATTATGTTCTAAAGAATTTACTCTAGCAACTTCGCTACGAACTCACATGGTCATCCATACAAGAAACGGAGATATAGTGAATGTTTAA
Protein Sequence
MDKLAHVNLEKVCRLCLLQTNTVHTIFTEVTTETFTLNIQKLLTKIVDIELTDAEELPNVVCEKCLQFLVEISRFLQLCLDSDRVIKAYYTELKLQENEVKVNVKEEFFEDEDYDNEDDDNEDEDNVDNGYDLSESENTPEEDARDNSKPEFSYYLQTQESGQKEYVCNLCTLHFITLNEFRSHIFTHGDEPFICNSCKKSYKHYHNLWFHINKRVNEKPNNDSNSTSKKGLKYYLQVQECGQEVHVCNLCSEHFIESCNFKNHLNTHGEEPFVCNQCKRSFKTYQHLINHLKKHLTLTDSQIQLEDEGYACNLCSEQFKKFKDLKNHLAVHGEKPYACNNCKKGFRNYTLLMVHIRRYTSLVRYKCELCDKSYREKSSLTIHLRTHRGERPYLCSTCGKSFTSITELKVHHRSHLEEGSHVCNYCGVKLRSKGSFNIHLRSHTAYYNELKLQENKQQDDDLLKFCDDEICDDFIEDSSEEDDNVDLDFPVEVEKKSPLKYYLETQETGETAYACNLCPESIIDSNDFENHLNNHGNEPYVCNDCESEFKSYKELEIHIKEHKIYKNKPGKYYREITEDGEERYTCNICMEKFGCYKDLKTHLYSHGDEPFVCNDCKHFYKTFRQLMIHVKTHISVERFKCDFCDKSYQQKGGLVIHQRTHLGEKPYLCSMCGKSFISKSDLKIHLRSHSDERKHLCTYCGMKYKSAGSLIIHSRIHTGETPYKCSLCIKSFRSSNALKKHRLTHTNLRPFNCNLCDKAFRTKTHLNTHIKSHSGCRPYTCELCSKEFTLATSLRTHMVIHTRNGDIVNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-