Sbim015987.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- ZFX
- Assembly
- GCA_963971135.1
- Location
- OZ020181.1:53835527-53839622[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 8.6 1.3e+03 1.5 0.7 3 23 169 190 168 190 0.91 2 21 0.0054 0.82 11.6 0.1 2 23 219 240 218 240 0.95 3 21 0.00019 0.028 16.2 3.2 1 23 246 268 246 268 0.97 4 21 0.00015 0.023 16.5 6.1 1 23 273 295 273 295 0.98 5 21 0.00081 0.12 14.2 0.2 3 19 304 320 303 320 0.96 6 21 1.9e-06 0.00028 22.5 1.6 2 23 388 409 387 409 0.97 7 21 0.087 13 7.8 0.5 1 23 414 436 414 436 0.96 8 21 0.0019 0.29 13.0 0.3 2 19 441 458 440 458 0.96 9 21 4.9e-07 7.4e-05 24.3 2.9 1 23 527 549 527 549 0.98 10 21 0.018 2.7 9.9 0.5 1 23 554 576 554 576 0.96 11 21 0.0019 0.29 13.0 0.3 2 19 581 598 580 598 0.96 12 21 4.9e-07 7.4e-05 24.3 2.9 1 23 667 689 667 689 0.98 13 21 0.033 5 9.1 0.2 1 23 694 716 694 716 0.96 14 21 0.00028 0.042 15.6 0.8 2 19 721 738 720 738 0.96 15 21 0.00031 0.046 15.5 0.4 1 23 769 791 769 791 0.95 16 21 1.3 2e+02 4.1 4.7 1 23 797 819 797 819 0.98 17 21 6.4e-05 0.0096 17.6 5.3 1 23 825 847 825 847 0.99 18 21 6.3e-05 0.0094 17.7 1.4 1 23 855 877 855 877 0.98 19 21 8.4e-07 0.00013 23.6 0.7 1 23 883 905 883 905 0.98 20 21 0.0021 0.32 12.9 0.1 1 23 911 933 911 933 0.97 21 21 8.9e-07 0.00013 23.5 2.3 1 23 939 961 939 961 0.98
Sequence Information
- Coding Sequence
- ATGAATGCGTCATGTAGAGCCTGTTTATCCCAAGAAGTTCATTTATACACCAATgaagaaactgaaaaaaatgaaattttatcggGGTTGTTGAACACTTTTACAGCCCTAACAGGCTTCGAgACTCATCCTATCTTCCTTGGAGGTGTCTTTAATTTATGTGAACCCTGTGAAGCGAGGCTTAAACTTTGTAATGAATTTCGAGAAATGTGTTTACAATCTTATACTCAACTCGGGCAACAATTCTTGAAAGTAGAAGAAGTAGATAAAGATGAGGAAATTACAGTTAAAAGTTTTAGTGTTTTGGAATTGAATAACGAGGAGTTTAGTGATTCTGTAGTCAGTGACGAAATTGAAACAGTGGAAAGTTTTGATTCTAAGCATGTAAAACATAAAGGTAAAGTTGCGACGATTAATAGTAATAAACGCTTGGAAAAATATTCAGAAGAAAGCGTGAAGAAATTAATTgatgaattaaatattaaattaagtaaattaaaaatgtgcGTCAGCTGTAATTATATTGCCGTAAAATGTGTAGATCTTCAACTACATATGGTTAAAAAACATCCatacCTAAACGATAATTGGTGTAATAAATGCAATCAACTTTTCGATCCTTCCAAAGAGCATGAACATCAGGAGAATATTTTAATATGCAAATTATGTggaaaaattgcgaaaaatcgTACAGACCTTGTAATTCATTATCAAGCACATATtgataatcaAAACTATGATTGTGATCTATGCGATAAATCGTACACCACAAAATGTGGTTTACGAACGCATTATAATTTGCATATGAATGTTAGTtacaaatgcaaattttgtCCTCGAACTTATAATCATTCAACTTCCTTACGAAGGCATTTAACTAAACACACGCAAGGAGACTTACAAAACGATTGTAAAATTTGCGATAAATCATTTAATAACCCAGAAGATTTGGATAACCATGATTGTGAAGTTGTAAATCCAAACGATGTGCCTGAAAATAGTTTAGTAGAAacAGATGCTATTATCAAAGAGGAAGTTGAAATATTAGATATTTTCGATTCTAAAATTGCAAAACATGAAGATAAAGTTTCGACGTTTACTAATAATAAacgtttggaaaaaaattctaaCGAAAGTGCTTTAAAAGgtcgtaaaaaaatttcttgtgaTAAATGCGATAGATCATACACtacaaaaagtaatttaaatgaGCATTATAAATCGCATATCATTCAAAGTTACGCATGCCAATTTTGTCCTAATACCTACAAACTTGGGAGATCCTTACGAAGGCATTTACTAGCACACTCTCATCAGGTAGAATGTGAAACTTGCAAGAAAAGGTTTGACAACCAAGAAGATTTGGAGAACCATGACTGCATTAATGAAGTTATAAATCCAAGTGAAGTGTCTGAAAATAGTTTGGTAGAAacagAAGCTGTTATtaatgaagaaattgaaatGGAAGAATGTTTTGATTCTAAAATTGTTAATCATGAAGATAAAGTGTCGACGTTTACTAATTATCAAGATTTGGAAAAATGTTCTAAGGAAAGCGCTTTAAAAGgtggTAAAAAATTCTCGTGTGATAAATGCGATAAATCATACACtacaaaaagtaatttaaatgaGCATTATAAATCACATATCATTCAAAGTTACGCATGCCAATTTTGTCCCAATACTTACAAACTTGAGAGATCATTACGAAGGCATTTAATTGCACACTCTCATCAGGTAGAATGTGAAACTTGCAAGAAAAGGTTTGACAACCAAGAAGATTTGGAGAACCATGACTGCATTAATGAAGTTATAAATCCAAGTGAAGTGTCTGAAAATAGTTTGGTAGAAacagAAGCTGTTATtaatgaagaaattgaaatGGAAGAATGTTTTGATTCTAAAATTGTTAATCATGAAGATAAAGTGTCGACGTTTACTAATTATCAAGATTTGGAAAAATGTTCTAAGGAAAGCGCTTTAAAAggtggTAAAAAATTCTCGTGTGATAAATGCGATAAATCATACACgacaaaaagtaatttaaatgaGCATTATAAATCACATACCATTTCAAGTTACGCATGCCAATTTTGtcctaatatctacaaacttGCGAGATCCTTACGAAGGCATTTAATTGCACACTCTCATCAGGTAGAATGTGAAACTTGcaagaaaaagtttaaaaaccaAGAAAATTTGGAGAACCATGACTGCACTAATAAATCTGGAAATTTAAACGAAATGCCTAAAAATACTAAATCAAAACGTCGAAGAAAAATATCTTTAAGAAACAAATATTACTTATGTAGTATTTGTGGTAAACAACTATGTTCAGTTGCGAATCTAAAAATCCATATGGATATTCATACAGGTGTAAAACCGTTTAAATGCCGCCACTGTGATTTCAGAACGAGATTTAGAGGAGTAATAACTAATCATGAACGAAGACACACAGGAGAAAAACCATATCAATGTAACGTTTGTCAAAAAaccTTTAATCAACAATGTAGCTTACGTTTACATTCTAAAACCCACCAAGGAGACTTAGGAAAACTGTTTCCTTGTCAACTTTGCGAAAAGCGTTATTATCGAAAAATAGATCTTCAATACCATATGCGCCTTCATACAGgtgAGAAGCCTTATCGTTGTAACCTTTGTCCAAAGGCTTTCAAGCAAAGCAGTTATTTAAAAGATCATCTTGAGATTCATAGAGATGTGCGACCATACATTTGTGCTTATTGTGGTGAAGGCTTTAATGCAAGATTTACTTTAAAGAATCATGAACTTATACATAAAGGAGAAAAGCCATATAAATGTGAAATTTGTAACTATGCTTTTCGTAAAGCAGATCACCTGAAAGTTCACATGAAACAACACAATAAATAA
- Protein Sequence
- MNASCRACLSQEVHLYTNEETEKNEILSGLLNTFTALTGFETHPIFLGGVFNLCEPCEARLKLCNEFREMCLQSYTQLGQQFLKVEEVDKDEEITVKSFSVLELNNEEFSDSVVSDEIETVESFDSKHVKHKGKVATINSNKRLEKYSEESVKKLIDELNIKLSKLKMCVSCNYIAVKCVDLQLHMVKKHPYLNDNWCNKCNQLFDPSKEHEHQENILICKLCGKIAKNRTDLVIHYQAHIDNQNYDCDLCDKSYTTKCGLRTHYNLHMNVSYKCKFCPRTYNHSTSLRRHLTKHTQGDLQNDCKICDKSFNNPEDLDNHDCEVVNPNDVPENSLVETDAIIKEEVEILDIFDSKIAKHEDKVSTFTNNKRLEKNSNESALKGRKKISCDKCDRSYTTKSNLNEHYKSHIIQSYACQFCPNTYKLGRSLRRHLLAHSHQVECETCKKRFDNQEDLENHDCINEVINPSEVSENSLVETEAVINEEIEMEECFDSKIVNHEDKVSTFTNYQDLEKCSKESALKGGKKFSCDKCDKSYTTKSNLNEHYKSHIIQSYACQFCPNTYKLERSLRRHLIAHSHQVECETCKKRFDNQEDLENHDCINEVINPSEVSENSLVETEAVINEEIEMEECFDSKIVNHEDKVSTFTNYQDLEKCSKESALKGGKKFSCDKCDKSYTTKSNLNEHYKSHTISSYACQFCPNIYKLARSLRRHLIAHSHQVECETCKKKFKNQENLENHDCTNKSGNLNEMPKNTKSKRRRKISLRNKYYLCSICGKQLCSVANLKIHMDIHTGVKPFKCRHCDFRTRFRGVITNHERRHTGEKPYQCNVCQKTFNQQCSLRLHSKTHQGDLGKLFPCQLCEKRYYRKIDLQYHMRLHTGEKPYRCNLCPKAFKQSSYLKDHLEIHRDVRPYICAYCGEGFNARFTLKNHELIHKGEKPYKCEICNYAFRKADHLKVHMKQHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -