Sbim002305.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020180.1:189195-199712[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 7.9e-05 0.012 17.4 0.3 2 23 96 117 95 117 0.96 2 34 0.0031 0.47 12.3 1.7 1 23 122 145 122 145 0.94 3 34 0.00096 0.14 13.9 0.4 1 23 150 172 150 172 0.99 4 34 0.00076 0.11 14.3 1.2 1 23 178 201 178 201 0.93 5 34 0.0088 1.3 10.9 0.5 1 23 206 228 206 228 0.97 6 34 0.00012 0.018 16.8 0.7 1 23 236 258 236 258 0.97 7 34 0.14 21 7.2 0.2 1 23 263 285 263 285 0.95 8 34 6.3e-05 0.0094 17.7 0.1 1 23 291 314 291 314 0.97 9 34 7.4 1.1e+03 1.7 0.7 3 23 321 341 320 341 0.95 10 34 4.2e-05 0.0063 18.2 1.5 2 23 476 498 475 498 0.96 11 34 4.1e-06 0.00061 21.4 0.5 1 23 503 525 503 525 0.97 12 34 0.0015 0.23 13.3 5.4 1 23 530 552 530 552 0.99 13 34 0.0038 0.57 12.1 0.1 3 23 560 581 559 581 0.96 14 34 0.0043 0.65 11.9 0.5 1 23 586 608 586 608 0.96 15 34 0.00038 0.057 15.2 2.8 1 23 618 640 618 640 0.97 16 34 7.1e-05 0.011 17.5 0.2 1 23 646 668 646 668 0.98 17 34 1.2e-05 0.0018 20.0 0.8 1 23 674 696 674 696 0.98 18 34 1.8e-06 0.00027 22.5 2.8 1 23 702 724 702 724 0.98 19 34 0.99 1.5e+02 4.5 5.6 5 23 733 751 730 751 0.95 20 34 0.01 1.5 10.7 0.4 1 23 836 858 836 858 0.96 21 34 1.1 1.7e+02 4.3 2.7 1 23 862 884 862 884 0.94 22 34 8.2 1.2e+03 1.6 0.9 1 23 889 911 889 911 0.80 23 34 0.0035 0.53 12.2 2.3 1 23 918 940 918 940 0.96 24 34 0.0065 0.97 11.3 0.5 1 23 946 969 946 969 0.97 25 34 9.4e-05 0.014 17.1 8.6 1 23 980 1002 980 1003 0.96 26 34 0.019 2.9 9.9 0.7 1 23 1081 1103 1081 1103 0.97 27 34 0.016 2.3 10.1 0.6 1 23 1107 1129 1107 1129 0.98 28 34 2.3 3.5e+02 3.3 0.6 1 23 1133 1155 1133 1155 0.96 29 34 0.0045 0.68 11.8 1.2 1 23 1162 1184 1162 1184 0.95 30 34 0.00081 0.12 14.2 5.8 1 23 1190 1213 1190 1213 0.95 31 34 0.00031 0.047 15.5 0.7 1 23 1222 1244 1222 1244 0.98 32 34 0.00071 0.11 14.4 0.1 3 23 1252 1271 1250 1271 0.96 33 34 5.7e-06 0.00086 20.9 3.9 1 23 1277 1299 1277 1299 0.98 34 34 0.0014 0.21 13.4 4.4 1 23 1305 1327 1305 1327 0.98
Sequence Information
- Coding Sequence
- ATGTACTTTTATTCTAGTTGTTggaataaatttgtaaatattataagGAGCGAAGATCTGATAAAAATAGATACTACCGTGGGTCCTAGGTATGTTCAGAAGAAGTTTGTAGAATTTCAGACAGCCGCTGAAAATAAAGCGGTTGCTATTAAAACGAAAGATGGCAAGATAATCCCTTTATTAGTTAAACCACTTGCTATAACATTTAGAAAGGATATTAAAACTCATGATGTACAAGAAGGTAcgaaaaaacgaaaatattcCAAATCGAGCATCAACTTATTGATTTGCGAAGTATGCGGTAAAAGATTCCGCAGTGAAGAAAGCTATAATTCTCACAGAGCCACACACGATGTAGAAGgtttcttttgtaaaaaatgcgatgaATCGTTTGAATCTTTAACGGCTTATCGTAAGCATAACAGGGGCATGCATAATTCCCTTAATTTCAAATGTAATATATGCGAAATAACTTTGGGTTCTAAAAAGGCATATCAAATTCATATACGCCGACATAAAGGAGAATATTCCCACAAATGCGAGGAATGCGGAAAAGAATTTTATTCGGCACTAGCTTATAATCATCACATGGATGCCGAACACGTGGGTATAAGATATCCATGCGATTATTGTGGATCAGTTTTAAAAAGTAAACGGTATTACAAGGAGCACCTCGCAAACCATCGAGAAAAAGTAGCAATTCGCTTCCAATGTgaagtttgtaaaaaatactaCAGCACCAAAAGTGGTCTACTAGCACACAGTAGAGCACACAAAGAAAGTCGTTTTATTTGCGACATATGTGGAAAGCAGTCGATTCAAAAAGGTGCCCATGACGCACACATGTTATCACATAGTGGCCAAAAATCTTACATGTGCGATTTATGCGGAAAGGGTTTTATCCGAAAAGATGTACTCGATAAACACATGGCGAAAATACATGAAATCTTTAAGCAAGCCTGTGAGAAATGtggtgatttttttcttaccgACTACGAACTACTATTGCATTTGCATACGCACGATGATATTGAAAAACCTTTTCCTTGCGACTTTTGCAGTGAAagCGTGAGCAAAACAAATGAAACATCAAACATTTACGATTTAAATTTGGGAATTGAAGCAAGTTTAAACTGCTGCgatttaaatttacaatcaAAGTGTTTACTACTAATAAATGACCCTGAAGATATTTTCGATAGTATTGAAAGTAATCCCGTAACTCAATTGAACGATACGGACAAAGACATATTGGAATTATTAGCTGAAGAAAAAGATTGCACagaaattttacagaaaattgGAAGCAACGAACAATTTGAACGTTTGATGAGTTCGGAAAATTTTATAGACTCGTTACAGTTTGAAAACGAAGAATCTAGCGATTTAAATGCTTTAAGTGTTAGTGATAATAAATCTTGTGATGTTTGtgaatattgtaaaaaagaatttaaatcaaAGCGAATGTTAAGATTGCATTTAAACACTCAACATCCGAATCGTTTATTTATTTGCGCTATTTGTAGTaaatcttttaagaaaaacagtGATTTATCTGAGCATATGAGAGGCCATTTTAAACCGACATTTCAATGCGATATTTGTGCACAACTTTTTGTTCACAAGTCGCATTTAACTACCCATCGAAAAAAACACACCGGAGAATTCACCAAATTTTGTGACCTTTGTGATAAAGGTTTTGTGAATATTTCTAGTTATATAAATCACGTTAATGTGctacacaaaaaaattatgcacgTGTGTGATGTTTGCGGTCAACAATTGAGTAGTTTAAGTAGTCTAACTGAACATAAAACTATTCACTCGCCTCATTATGGCAAACAAAGAAATCATATTTGTGATACCTGCGGTAAAACCTATTTAACcgcaagaaatttaaaaactcacCAAAAGACGCATTtacgtgttaataaatatatttgtaatatttgtgGTAAGGCGTTAAGTAGTAAAAAAGTTTTGGAAACTCATGTGAAAACTCACGTTGGGGAAAAGAATTTCGCTTGTGATTATTGTAGTAAATCATTCGCTGCAAAGGAGTATCTTACTACTCATTTAAGAACTCATACCGGTGATAAACCATTCAAATGTAAGTTGTGTGATAAATCGTTTACTCAAAGGACCTCGCTCACTGTACATGTGAGGTATCACACGGGAGAACGACCTTATAAATGCCATTGTGGGAAAGGGTTTATTACTAAAAGTAGACTGACATGTCATTATAAAACTCATGATGCACCTAATTTGGAAATTTGCTATGTTCCACAAGGAAGCTGTTTAAAGAAAAGACGTCGCTCCAAAAAAACAAGGGACAACACTTTGGAAGAAAAAGCTCTTTATAGATTATTACATAAGAAAAACAATTACGTTTGCTATATTTGCCAAAATGATACGACAATGTCTGAGGAATTTCTAAAAgatcattttttagaaaaacatccCGAAgatgcaataaaatataaagtgatTTGTCCAAAAGAAAGTCATCGTTGTGAAATTTGTTATGAAGAATTTTCTTCCGTAGTATTTTTAAACGAGCACATGGAAGGACATGATGATCAATATAACTGTGGTAGATGTAAACGCGGTTTTAAAAGACTCTTGGATTATATTTTACACAATCACTCGCATAATAATAAGGGATACGAGTGTACAGTATGCAATTATGAATGTGGTGAGAAGAACCGTATGATACTTCATGTAGATCAACACGTGTTTAATAAAAGCATTTATAAATGTGAAATGTGCCAGAAAAGATTTAATGTTTACCGTTACTTTCAAGAACACCAGATAGATCATACTGGGGAGAAACCCTACATGTGCGAAGCTTGTGGTGTCCCATTTAGACTCACCAGATATTTAAAGCAACACATAAGGAATAAACACCCcgaattaatatttaaacaagtTCCAAATTACAAATGCGAACATTGCGATAAAACTTTTAACCAAAAGCGATATCTAAACCACCACGTGCAGCTTCACCACAATAGAAAAAATTCAATTCAcaaacaaaaaaagaagCGTATTAAAAAGAGTGTCCGATGTAATTCAAAGGAAGAGATGTATCTTTATAGACCTTTGCGGCAcaagaataatttaatttgttatatttgCAATGATGATGAAACGATGTCTAAAGAAGActtgaaaatacatttttctgagCATCATGCCAATGACCCTATCAAATTCAAAGTAATTTGTCCAAAGGAAAACCATCGATGTGAAATATGCTATGAAGAATTTTCATCAGTGGTTTACTTAGACACTCACGTAAATAGTCACGAAGTTCAACATACTTGTAAATCTTGCGGTGCAGGTTTTCGGAAAGCGGTTGATTACATTTTGCATGAACAAACACACACTAATGTGTATAAATGTATTTTATGCGATTTTGAAACTATCAAGAAAACTAATATGGTAACACACATCGATAAACATGTATTTAATAGAAGCATTTACAAATGTGAAATATGCGATAAAAGATTTTCAGTGTATAGAATTTTTAAGGAGCACCAAGCTTCACATGAAGGAATTAAACGACATTGCTGCGAATTTTGTGGAAAATCGTTTACTTTtgaagattatttaaaatcgcACAGACGACAGATTCATTTTGATATACTAGGCGCGAAATCTTATGAATGCCATGTATGTAACAAATTATTCGGTTTGCCATCGCTACTAAATGAACATCTTAAGAGTCACGGTAATACCGATAGAGTCATTTGTGATATTTGCGGGAAAAAATTTCGACCTGGGTTATTGGCCCTCCATAAAAGAATCCACTTGGGGATAAAAGATCACAAATGTAATTATTGTGAAAAAAGTTTTGTGACAAAGCAACGTTTACAAGTACATATTAGAACTCACACCGGCGAAAGACCTTATAAGTGTGATtattgtgataaaacttttaatcaaattaattccAGAAAAATTCACCATCGTCTACATACTAATGAACGACCATTATCTGGGAATAAGGAGAAAGTTAGAAAAATAGGGAAACATACCAATGAACAAATGAAAATcgcattaaatttaataaaagatggAAAGAAGATAAGACAAGTAGCAAGAGAAACAAAAATACCATTTACTACGGTgcagagatatttcaagaaagttGCTGAAGCTAATATGGAAGAAGATAATGTAAGACTTGTTCCTAACTATCAAGTAAATATGATATTTTCTAATGAAGAAGAAACAACATTGAAAGATTACTTAAAATATTGTGCAAATCTTTTTTATCGGCTCACAGCAAAAGATTGTCGTGTTGTGGCATATGAAATGGCAAAATGTCATAACAAAAAAATGCCTGTTTCTTGGTCAACGAATCAAATGGCCGGTTTGGATTGGCTAAGAAGGTTTAGATTCCGAAACCCTGATTTAAGCTTACAAAAACCAAAGGCTTGTATTCCTGGTTTTGCGTTTAATAAAGGAACAGTCAAAGTATTCTttgataatttagaaaatataatgGCGAGGAACCTGGTTTTTGCAGATGGCACGCGAATTTATAACTTGGATGAAACCACTGTACAAAAACCTAAGAAAGTCTTTGGAACAAAAGGTCAAAAAGGAGTAGTGTGCACAACTTGTTGTATTATTGGTGCTAGTGGTATTGCGCTTCCTCCTGTTATTATTTATCCTCGTAAGAAGACGTATCCAAGAATGAATGTAGCCGCTCCACCAGATACATTAGTCCTTGCAAAAGAATCCGGGTGGATGAATGCTGAGTTGTTCACTAAAGTGATGAAACACTTCATTACACATAGTCACAGTACTCCAGACAATCCAAGTATACTTATACTCGATAACCACGAGTCACATTTAAGTATTAATGCGCTTGATATGGCCAAAAAATTTGGTGTTGTTATTCTTACTCCACCACCACATACTTCATTAAAATTACAACCGCTGGAAGTTGGAGTTTTCAGTGAATTCAAAGAATATTATAACAATGCTATGCATTCTTGGTTAGCGCAACATCCTGCATCTCCATTTACCATCTATGATGTAGGAGGACTAATTGCTACAGCTTTTACTAAGTCCATGACTCCTTGCAACATTATTAATGCCTTTAGAAAAACTGGAATTTTTCCTTTCGACAGAACAATTTTCAATGATGACGACTTCTTACCGAGTAGTGTAACGGATCCATTTGTTCACGTGAAATCAGAAACTGTTGATGGCcacgaaattaaaattgaaccgatttaa
- Protein Sequence
- MYFYSSCWNKFVNIIRSEDLIKIDTTVGPRYVQKKFVEFQTAAENKAVAIKTKDGKIIPLLVKPLAITFRKDIKTHDVQEGTKKRKYSKSSINLLICEVCGKRFRSEESYNSHRATHDVEGFFCKKCDESFESLTAYRKHNRGMHNSLNFKCNICEITLGSKKAYQIHIRRHKGEYSHKCEECGKEFYSALAYNHHMDAEHVGIRYPCDYCGSVLKSKRYYKEHLANHREKVAIRFQCEVCKKYYSTKSGLLAHSRAHKESRFICDICGKQSIQKGAHDAHMLSHSGQKSYMCDLCGKGFIRKDVLDKHMAKIHEIFKQACEKCGDFFLTDYELLLHLHTHDDIEKPFPCDFCSESVSKTNETSNIYDLNLGIEASLNCCDLNLQSKCLLLINDPEDIFDSIESNPVTQLNDTDKDILELLAEEKDCTEILQKIGSNEQFERLMSSENFIDSLQFENEESSDLNALSVSDNKSCDVCEYCKKEFKSKRMLRLHLNTQHPNRLFICAICSKSFKKNSDLSEHMRGHFKPTFQCDICAQLFVHKSHLTTHRKKHTGEFTKFCDLCDKGFVNISSYINHVNVLHKKIMHVCDVCGQQLSSLSSLTEHKTIHSPHYGKQRNHICDTCGKTYLTARNLKTHQKTHLRVNKYICNICGKALSSKKVLETHVKTHVGEKNFACDYCSKSFAAKEYLTTHLRTHTGDKPFKCKLCDKSFTQRTSLTVHVRYHTGERPYKCHCGKGFITKSRLTCHYKTHDAPNLEICYVPQGSCLKKRRRSKKTRDNTLEEKALYRLLHKKNNYVCYICQNDTTMSEEFLKDHFLEKHPEDAIKYKVICPKESHRCEICYEEFSSVVFLNEHMEGHDDQYNCGRCKRGFKRLLDYILHNHSHNNKGYECTVCNYECGEKNRMILHVDQHVFNKSIYKCEMCQKRFNVYRYFQEHQIDHTGEKPYMCEACGVPFRLTRYLKQHIRNKHPELIFKQVPNYKCEHCDKTFNQKRYLNHHVQLHHNRKNSIHKQKKKRIKKSVRCNSKEEMYLYRPLRHKNNLICYICNDDETMSKEDLKIHFSEHHANDPIKFKVICPKENHRCEICYEEFSSVVYLDTHVNSHEVQHTCKSCGAGFRKAVDYILHEQTHTNVYKCILCDFETIKKTNMVTHIDKHVFNRSIYKCEICDKRFSVYRIFKEHQASHEGIKRHCCEFCGKSFTFEDYLKSHRRQIHFDILGAKSYECHVCNKLFGLPSLLNEHLKSHGNTDRVICDICGKKFRPGLLALHKRIHLGIKDHKCNYCEKSFVTKQRLQVHIRTHTGERPYKCDYCDKTFNQINSRKIHHRLHTNERPLSGNKEKVRKIGKHTNEQMKIALNLIKDGKKIRQVARETKIPFTTVQRYFKKVAEANMEEDNVRLVPNYQVNMIFSNEEETTLKDYLKYCANLFYRLTAKDCRVVAYEMAKCHNKKMPVSWSTNQMAGLDWLRRFRFRNPDLSLQKPKACIPGFAFNKGTVKVFFDNLENIMARNLVFADGTRIYNLDETTVQKPKKVFGTKGQKGVVCTTCCIIGASGIALPPVIIYPRKKTYPRMNVAAPPDTLVLAKESGWMNAELFTKVMKHFITHSHSTPDNPSILILDNHESHLSINALDMAKKFGVVILTPPPHTSLKLQPLEVGVFSEFKEYYNNAMHSWLAQHPASPFTIYDVGGLIATAFTKSMTPCNIINAFRKTGIFPFDRTIFNDDDFLPSSVTDPFVHVKSETVDGHEIKIEPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -