Sbim003145.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020180.1:13624905-13627238[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.036 56 5.2 0.3 11 38 148 170 143 176 0.80 2 10 1.3 1.9e+03 0.3 0.7 4 29 168 192 165 202 0.71 3 10 0.013 20 6.7 0.8 14 39 205 227 192 231 0.82 4 10 0.00045 0.7 11.3 1.4 5 30 224 249 220 262 0.80 5 10 0.053 82 4.7 0.9 15 38 262 282 251 288 0.71 6 10 0.0073 11 7.4 3.9 13 35 288 312 279 314 0.77 7 10 0.01 15 7.0 1.7 5 38 308 342 305 346 0.79 8 10 0.085 1.3e+02 4.0 1.3 17 39 348 367 341 374 0.84 9 10 0.058 89 4.5 2.3 5 41 365 397 362 399 0.77 10 10 5.5e-05 0.085 14.2 2.2 14 39 401 423 397 430 0.89
Sequence Information
- Coding Sequence
- atggAAGATAGTATCCTTCAAGaaGGAGAGTGCTCAATAAAACAAGAAATAGTAAAACGTGAATATGAAGATTTTGATGAAGCCAGTCTTCAAGATGACTCCATGAAAAATGAGAATGACGAATTAgatttcctaataaaacaagaaactttacataataatacaaaaattgagGAGTTTAATAAACATTTCCTTGGAGATGATGTGCAGAAAGTTAATAACGGAGaggaATGGTTAATAAAGCAAGAAAGTTTACACCATGAAATAAAACTCGAGGAATTTGATGAAAATCCAGTTAATATTCCAAACACTGAAAATAGTGAAGTTAACATAAACTCGGAAAAATCTACACCTGACTCTGACGTTGATCCAGGGGATGATTCTTCATGGGGAACAAAAGCCTTTGCTGAAGAGTTTCCACTACAAAACGAATTGGAAAATCCTGAGAAACTATTTGAATGTTTGCAATGCAATAAAAAGTTTACACAAAAGTGGAATCTAAAAGCGCATGTAATGCTTCACACGGGTGAAAAACCATTTGAATGTACAACGTGCAATAGCAAATTTACAACaaagagatatttaaaaattcatttactAATTCACACAGGTGAAAAACCATTCAAATGTGAACACTGTGATAAAAGTTTTGCACAAAGTGCTACCCTGAAGTATCACTTATTACTGCACAAAGATGAAAAACCATTCGAATGTGAACTAtgcaataaaacattttctagACGGCACAGATACAAAACGCATTTGTTACTTCATACAGGTGAAAAACCTTTTGAATGTGAACTTTgtaaaaaaccattttcaaaCAGGGGAACACTTAAACGACATTCATTAACCCACCACAGTGAAAAAGCGTTTGAATGTGaatattgcaataaaaaatttactcaaaagtTTCTATTAAACTATCATAGATTGACTCACACAGATGATAAACCATATGAATGTGAACtgtgcaataaaaaatttatagaaaggCGTCATCTTAACACTCACCTAATGACACACACTGGTGAAAAACCGTTTGAATGTGAAATCTGCAGTAAAAAGTTTACAGAAAATCGAGCTCTTAAAAGACATTTGCTCATTCACACAGGTGAAAAACCTTTCGAATGTGAactctgtaataaaaaatttgggcaAAAGCAACATCTTAAGGAACATTTAGTTAGACATAATGGTGAAAAACGATTTGAATGTGAATACTGTAAGAAAAAGTATGCTCGAAAACAAAATCTTAAAGCACATTTATTGATTCATACAAGTGAGAAATCACTTGAACAGAAGGATTAG
- Protein Sequence
- MEDSILQEGECSIKQEIVKREYEDFDEASLQDDSMKNENDELDFLIKQETLHNNTKIEEFNKHFLGDDVQKVNNGEEWLIKQESLHHEIKLEEFDENPVNIPNTENSEVNINSEKSTPDSDVDPGDDSSWGTKAFAEEFPLQNELENPEKLFECLQCNKKFTQKWNLKAHVMLHTGEKPFECTTCNSKFTTKRYLKIHLLIHTGEKPFKCEHCDKSFAQSATLKYHLLLHKDEKPFECELCNKTFSRRHRYKTHLLLHTGEKPFECELCKKPFSNRGTLKRHSLTHHSEKAFECEYCNKKFTQKFLLNYHRLTHTDDKPYECELCNKKFIERRHLNTHLMTHTGEKPFECEICSKKFTENRALKRHLLIHTGEKPFECELCNKKFGQKQHLKEHLVRHNGEKRFECEYCKKKYARKQNLKAHLLIHTSEKSLEQKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01371627;
- 90% Identity
- iTF_01371627;
- 80% Identity
- iTF_01371627;