Smel064510.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757315.1:102649587-102665622[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.003 0.42 13.4 2.3 1 23 277 299 277 299 0.98 2 13 9e-05 0.013 18.2 3.3 1 23 339 361 339 361 0.98 3 13 9 1.3e+03 2.4 4.1 1 23 370 393 370 393 0.96 4 13 9.1 1.3e+03 2.4 3.3 1 23 404 426 404 426 0.96 5 13 0.0036 0.51 13.1 1.1 1 23 468 490 468 490 0.98 6 13 0.00083 0.12 15.1 1.9 1 23 499 521 499 521 0.98 7 13 0.0018 0.26 14.1 0.9 1 23 623 645 623 645 0.97 8 13 0.0015 0.21 14.3 0.4 1 23 654 676 654 676 0.96 9 13 0.0033 0.47 13.2 0.9 1 23 685 707 685 707 0.98 10 13 0.0049 0.7 12.7 2.4 1 23 716 738 716 738 0.98 11 13 0.0013 0.19 14.5 2.0 1 23 747 769 747 769 0.97 12 13 2.3 3.3e+02 4.3 4.1 1 23 778 800 778 800 0.95 13 13 0.12 17 8.4 7.3 1 23 809 832 809 832 0.97
Sequence Information
- Coding Sequence
- ATGGATGTATCTAAGGAAGCTGTGATATGTAGCGAATGTTCCAATAAACTTGAAGTGTTCCTTAGGTTCAAATCTGCGAGTAATTATATATTATCTAAGGATATGAAGGTGATGTTACCgatcgaaattaaaaatgataccGGTGTGTATCCAGAAGTGAATAAAATTTCGGAGAATTCAATATTGCTTGTAGAATCCAAAAATGAAGTAAAATGCTGTTTTTGTACAAAAACTAATGAAAGGGAATTCCTTACATTGTTAAATGAATCAAAAGAACATCATTTTATGGTGGATGTACTAAAAGAACATATTCCGAAATTGaatttAAATATAACAGAAGAACTTTTAGTATGTGGAATATGCCTTAATGGATTGCAACTtgtttcaagttttataatgaaGTGTTTGGATGTGGAGcagaaaataagagaatatgcACAAATTAAAGGAACGAATGAAGAAGGCCAGATAGATTTAAAGGATGTACACCAATTTGTATTTGTACCAACAGTAACATTTGAAACTGAATCTAGTAATGCAAATGAATTAAAAGAGAGACATGATCAATTTCAAGCGGGATGTACCATGCTAACTGAGGCTGATATAAAATGGGAAAAGAAAATAGAACATCCagaatttataattaaaacagaagatattgaaattaaaacagaACACAGCGATTGCAATAGCTTTCAAGAACCTCCTACAATAAGTAAAATGAACAATGGATCTTTTGATGTTCCTAGGTGTAATTCACAAAGAGGTTGGCAAAAATGTGTTAATCAGCATGAGTTGATCTATAAAACTTCTGATGGAATAACAATGTATGAGTGTGAAACATGTCCatatgaaacaaaacaaaaagtttGTCTTGAACGACACAAATTAACCCACAAAAGTATTTCAGAGTTAACACTGTTCAGGTGCGAAATATGTACATTTGAGACAGAATGTAGAGATGTTCTTAAACAACACACATTGACCCACAACAATACTTCTGAGCTAACAGTGTTTAAGTGTGATCTGTGTACATATGAGACAAAGCGTAAGTCAAATCTTAATCGGCACAAATTGACCCATAACAGTACCTCAGAGCTAACAGTGTTTAAGTGTGATCTGTGTCCATATTATGAGACAAAACATAGTCTAAGCTTTAAACGGCACAGATTGAGCCACAGATTGAGGAGTACTTCAGAGTTAACAATGTTTAATTGTGATCTCTGTCCATATAAGGCAAAATGCCGAGATTTTCTTAAACAGCACACATTGACCCATAAAAACACTTCAGAGTTAACAATATTTAAGTGCGACCTACGTTCAGACGAGGGAAAATGCAAGCGTTATCTCCCTAAACACAATTTAATCCATAGTAGTACTTCAGAGTTAactgtaacaatgtttaagtgtgatctCTGTACATATGAGACAAAACGTAAGCCAGATCTTAATCAGCACAAATTGATCCACAAAAGTACCTCACaggtaacaatgtttaagtgtgatctCTGTACATATGAGACAAAGCGTAAGCCAGATCTTAATCGGCACAAATTGACCCATAAAAGTACCTCAGAGCTAAcagtttttaaatgtgatctgtGTCCGTATTATGAGACAAATCATAGGCGAAGTTTTAATCAGCACAGATCGAGTCATGCATTGAGTACTTCAGAGTTAACAATGTTTAATTGTGATCTCTGTCTATATAAGGCAAAATGCCAAGATCTTCTTAAACAGCATGCATTGACCCATAAAAACACTTCAGAGTTAACAGTGTTTAAATACGATCAATGTTCATATGATCGAAAACATAGGGACTATCTTAAACAACACAATAGTAATAGTTCTTCAGATGTAACAATATTTAACTGTGAACTGTGCCCATATGAGACAAAACAAAAGCAAAATCTTAATAACCACAAATTGATCCACAAAGATACTTCAGAGGTAACAATATTTAAGTGTGATCTGTGTCCATATGAGACAAAACGTAAGGCAGATCTTAATCAGCACAATTTGATCCACAAAAATACCTCAGAGGTAACAGTGTTTAAATGTGATGTCTGTACATATGAGACAAAACGTAAGCCAGATCTTAAACTGCACAAATTGATCCACAAAAGTACCTCAGAgataacaatgtttaagtgtgatctCTGTACATATGAGACAAAGCGTAAGCCATATCTTAATCAGCACAAATTGACCCACAGAAGtacttcagaggtaacaatgtttaagtgtgatctGTGTCCATATGAGACAAAACGTAAGCGAGATCTTAAACATCACGCTTTGATCCATAAAAGTACCTCAGAGGTAATAATGTTTAAGTGTGATCTCTGTACATATGAGACAAAATGTCGAGCTCATCTGAAACGTCATGCTGTGGTTCATAAAAGTACTGCAGAGGTAAGAATGTTTAAGTGTAATCTCTGTACACATGAgacaaaatataaacattgtcTAATCAGACATATAAGAGCACTTCATAGAAACATTGTTTAA
- Protein Sequence
- MDVSKEAVICSECSNKLEVFLRFKSASNYILSKDMKVMLPIEIKNDTGVYPEVNKISENSILLVESKNEVKCCFCTKTNEREFLTLLNESKEHHFMVDVLKEHIPKLNLNITEELLVCGICLNGLQLVSSFIMKCLDVEQKIREYAQIKGTNEEGQIDLKDVHQFVFVPTVTFETESSNANELKERHDQFQAGCTMLTEADIKWEKKIEHPEFIIKTEDIEIKTEHSDCNSFQEPPTISKMNNGSFDVPRCNSQRGWQKCVNQHELIYKTSDGITMYECETCPYETKQKVCLERHKLTHKSISELTLFRCEICTFETECRDVLKQHTLTHNNTSELTVFKCDLCTYETKRKSNLNRHKLTHNSTSELTVFKCDLCPYYETKHSLSFKRHRLSHRLRSTSELTMFNCDLCPYKAKCRDFLKQHTLTHKNTSELTIFKCDLRSDEGKCKRYLPKHNLIHSSTSELTVTMFKCDLCTYETKRKPDLNQHKLIHKSTSQVTMFKCDLCTYETKRKPDLNRHKLTHKSTSELTVFKCDLCPYYETNHRRSFNQHRSSHALSTSELTMFNCDLCLYKAKCQDLLKQHALTHKNTSELTVFKYDQCSYDRKHRDYLKQHNSNSSSDVTIFNCELCPYETKQKQNLNNHKLIHKDTSEVTIFKCDLCPYETKRKADLNQHNLIHKNTSEVTVFKCDVCTYETKRKPDLKLHKLIHKSTSEITMFKCDLCTYETKRKPYLNQHKLTHRSTSEVTMFKCDLCPYETKRKRDLKHHALIHKSTSEVIMFKCDLCTYETKCRAHLKRHAVVHKSTAEVRMFKCNLCTHETKYKHCLIRHIRALHRNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -