Basic Information

Insect: Stenurella melanura
Gene Symbol: -
Assembly: GCA_963583905.1
Location: OY757315.1:49003102-49013317[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.035 4.9 10.0 0.3 3 23 326 347 325 347 0.96

2 7 0.5 71 6.4 1.5 1 14 376 389 376 399 0.74

3 7 1e-05 0.0015 21.1 3.0 1 23 405 427 405 427 0.98

4 7 0.0009 0.13 15.0 0.7 1 23 433 455 433 455 0.98

5 7 3.3 4.7e+02 3.8 0.3 2 12 498 508 498 517 0.81

6 7 5.8e-05 0.0082 18.8 0.4 3 23 531 551 530 551 0.99

7 7 8.4e-05 0.012 18.3 4.5 1 23 557 579 557 579 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.035	4.9	10.0	0.3	3	23	326	347	325	347	0.96
2	7	0.5	71	6.4	1.5	1	14	376	389	376	399	0.74
3	7	1e-05	0.0015	21.1	3.0	1	23	405	427	405	427	0.98
4	7	0.0009	0.13	15.0	0.7	1	23	433	455	433	455	0.98
5	7	3.3	4.7e+02	3.8	0.3	2	12	498	508	498	517	0.81
6	7	5.8e-05	0.0082	18.8	0.4	3	23	531	551	530	551	0.99
7	7	8.4e-05	0.012	18.3	4.5	1	23	557	579	557	579	0.99

Sequence Information

Coding Sequence: atggaaacacaagaagTAGTGAGTTTAAATGAAGTTTGTGTTGCCtgtttaataaaaacagaaaatatgAAGCAATTGCTTTATGCCGATGACgaaattttacaattaatttcGAAGTTATCATCAGTTTCAAATCTAGAGaTTGAAGTTAATGACACTCTACCATGTTTTCTATGTAACAGTTGTGAGGAAAAATTACACATTTCTTATGAATTTCAACAGTTATGTCAGAAATCTCATAATATCATAGAATGCTTATCAGCAACTAATTCTGTAACTCTAAAAGTAAATGACATATATAAACCAATAGAGTTAGACGATAGTTCAGAAAGTGCAGAAATACATTCGGAACAATTGGAAAATTCTATTACTTTTATTAATAACGATGTTCTGAAGAAGAAAGTACAGATTTCTTATGAAGACTCTGAAACAGATGTACCTGTAGATGAGAATGaggaatttattattttaaaggaaacaccAAATGATTGTTTTGGaaaagcaaaaaatttaaatgataCATGTATAGAGGACTACGGTATAAAAATAGGGAATACTGACAAAAATGAATTGTTGAGTAGTGATGAAAACTTTGTGAAAACTTCGGAAGTTGAGAGAATAGAATGTAATCAATCCACGAATTTATCTCATTATTCCTCTGAGGAAGTagataaaattataatacaatTTGACGAAAATTCATCAGATATAGATATACAGGCAGGACAACTGAAAAATGAATCAAATACTTTTATTAATACTGATGGCTTCGAgaatttagatgaaaaatctaTACAAATTGAGAGTAGTAAAAGTAATGATTCATTGAACAGTGATGTGGAACATTTTGTAAAACCTTCAGAGGTCGATAAGAGAACGAAAAGCAACCAAACCATGAGGTTACCCCAATATACGCCTGAAGAAGtagagaaaattataaaaatgactAAAATGAGATTCCGTAAACCAGTTGACTGTTTATATTGTGGGTTTACAGCAAAAGACTCTAGAGCGTTGTCTCTACATATGACACGATtgcataaAGAACTAAAGAAACAGTGGTGTTTATGGTGTAACAATAGTTTTGAAAACATGGAGGACCATGAGAATGATCACAGAGAAGACTTTAAGTGCCCATTATGTGAGAAATATTATAGAACAAGCACAGGTCATTTTATGGAACATCTAGCTAGTCACTCAACTGTGCGAAAATTTCAATGCAAGAAATGTGAAAAATCGTTTATTTCGCAGAGACATTTAATTATGCATGAGAGAGTCCATACAGCTGAGAAGGAGTTTATTTGCAAGATTTGTTCTATGGAGTTTGCGTTGCTAAGATCACTGAAATCTCATCTAAAAACTCATAAAGAGCATTGGTGTGCAACTTGTGAAGAATACCTAGACCCTATTATGGAATACCCTGTACACAAATGCTTTTCCAGTGGAGATAAAGAAGGTGGAGCAGATGATGACAAGGCAAAACCGAAAAATTACTGCAAAATATGTGATAAGAAAGTTAGAAGTCTCCAAGGACATCTAGACCGATATCATTCTAATCAAAAGAAAGACGAGAAAGATATCAAGGCCTTGTGTACATATTGCGGAAAACAATTTAAGTCCATTGGAAAGCTGACAATTCACGTCCGAATACATACTAGAGAGTCCCCATATAAATGTGAGTTCTGTGACAAGAGGATGACTACAAGGGTGCACTTGAAGACTCATATCAGAACCCATACTGGTGAAAAACCACATGCTTGTAAAGTTTGCGGCAAGGTAAATGATCATAATACACCGGCGGTACATGACCAGTCAGGGGCAACGTTTTTAAAATGTATGCCAATCCTATATATGAATATAATTACCATGAGTATGCCACAAACGTGA
Protein Sequence: METQEVVSLNEVCVACLIKTENMKQLLYADDEILQLISKLSSVSNLEIEVNDTLPCFLCNSCEEKLHISYEFQQLCQKSHNIIECLSATNSVTLKVNDIYKPIELDDSSESAEIHSEQLENSITFINNDVLKKKVQISYEDSETDVPVDENEEFIILKETPNDCFGKAKNLNDTCIEDYGIKIGNTDKNELLSSDENFVKTSEVERIECNQSTNLSHYSSEEVDKIIIQFDENSSDIDIQAGQLKNESNTFINTDGFENLDEKSIQIESSKSNDSLNSDVEHFVKPSEVDKRTKSNQTMRLPQYTPEEVEKIIKMTKMRFRKPVDCLYCGFTAKDSRALSLHMTRLHKELKKQWCLWCNNSFENMEDHENDHREDFKCPLCEKYYRTSTGHFMEHLASHSTVRKFQCKKCEKSFISQRHLIMHERVHTAEKEFICKICSMEFALLRSLKSHLKTHKEHWCATCEEYLDPIMEYPVHKCFSSGDKEGGADDDKAKPKNYCKICDKKVRSLQGHLDRYHSNQKKDEKDIKALCTYCGKQFKSIGKLTIHVRIHTRESPYKCEFCDKRMTTRVHLKTHIRTHTGEKPHACKVCGKVNDHNTPAVHDQSGATFLKCMPILYMNIITMSMPQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -