Basic Information

Insect: Stenurella melanura
Gene Symbol: -
Assembly: GCA_963583905.1
Location: OY757315.1:106136829-106149618[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00037 0.052 16.2 2.2 1 23 276 298 276 298 0.99

2 13 0.11 16 8.5 5.5 1 23 307 330 307 330 0.95

3 13 0.014 2 11.3 3.9 1 23 339 361 339 361 0.96

4 13 0.029 4.1 10.3 3.6 1 23 364 386 364 386 0.98

5 13 0.02 2.8 10.8 1.3 1 23 395 418 395 418 0.96

6 13 0.94 1.3e+02 5.5 4.8 1 23 427 449 427 449 0.98

7 13 0.0049 0.69 12.7 3.9 1 23 458 480 458 480 0.98

8 13 0.015 2.1 11.2 1.6 1 23 489 512 489 512 0.92

9 13 0.0099 1.4 11.7 1.6 2 23 522 543 521 543 0.97

10 13 8.5e-05 0.012 18.2 2.3 2 23 553 574 553 574 0.98

11 13 1.2 1.6e+02 5.2 0.3 2 23 584 606 583 606 0.92

12 13 0.12 18 8.3 1.5 1 23 612 634 612 634 0.97

13 13 0.0019 0.27 14.0 1.9 1 23 643 665 643 665 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00037	0.052	16.2	2.2	1	23	276	298	276	298	0.99
2	13	0.11	16	8.5	5.5	1	23	307	330	307	330	0.95
3	13	0.014	2	11.3	3.9	1	23	339	361	339	361	0.96
4	13	0.029	4.1	10.3	3.6	1	23	364	386	364	386	0.98
5	13	0.02	2.8	10.8	1.3	1	23	395	418	395	418	0.96
6	13	0.94	1.3e+02	5.5	4.8	1	23	427	449	427	449	0.98
7	13	0.0049	0.69	12.7	3.9	1	23	458	480	458	480	0.98
8	13	0.015	2.1	11.2	1.6	1	23	489	512	489	512	0.92
9	13	0.0099	1.4	11.7	1.6	2	23	522	543	521	543	0.97
10	13	8.5e-05	0.012	18.2	2.3	2	23	553	574	553	574	0.98
11	13	1.2	1.6e+02	5.2	0.3	2	23	584	606	583	606	0.92
12	13	0.12	18	8.3	1.5	1	23	612	634	612	634	0.97
13	13	0.0019	0.27	14.0	1.9	1	23	643	665	643	665	0.99

Sequence Information

Coding Sequence: ATGAACGAGAAAATTTGCAGACTTTGCCTGCAGACAGTAAATGGAAATCATCAAGAGAtaaaagaaaatgtgaaaaacattttgaatttgAATCTTAATATATCTGAGGACACTGCTATGTGTATTGAATGTAGGAAGAACACTCAAGCACTTTTTAACTTCAAATCAGTTTGTGTTGACATGACGAAGAGGAACATATTTTTTACTGATTTGAAGAATGAGGTGACTTTGGATCCAGTTATgattgaaaatacaaataatCTAGAATCATTTAGAGAGCTCAAAGGTGACATAAGATGTAGTTTTTGTGCCGAATCAGTGGTAACAGAAAGCCTTACATCACTAGATGAATCAAAGGAGAACATATTCTTGGTGGATATTCTAAAGAAACATATTCCAGAATTGaatttcACTAATATCGAAGAACTTTTAACATGCAAATCCTGTCTTGATGAAATTCAAAGTGTTTCAAGTTTTCTAACGAAATGTTGGGATGtggaagagaaaataagtaaatatactGAAATAGAAGGAACAGATGATAAAGGACACATAGAATTAAAGAATGTACAACAATTTGTATTCCAGCCAGTGTTAGAATTTAAAGACGAGTCCTACCATGTACATGAATTAGGACAGATAGATGATTGCATTAAAGAAGAATTTTCCATCAAAACTGAGGCTGAAATTAAATATGATATAGAAGTAGATGACCCAGAACTGTATATTGAAACAGAAGATGCTGATATTAAATCAGAACAAATTGATTGCGATAGttttgaaGAACCATTCACTGATCACAAGAATTCGTTTGATGTAACAGTGTATAAGTGTGAAACTTGTACATACGAGACCATTACCAAGGATCATTTGAATGATCACATATCAACCCATAAAAGCCATCCAGGGACAAAATTGTTCAAGTGTGAACTGTGTACATTCGAGGGAAAACATAAGCATGATCTTACCAGACACATACATTTAGTCCATGACAATCCTTTAGAGAAAACATCGTATAAATGTGGTGTATGTACTTATGAAACCAAGCATAAGCAGTATCTTAAACGACACAAATTGGCCCATAAAAAGTTCAAGTGTGACATGTGCGAGTATGAGacgaaatataaaaaacatcttAGTGATCACAAATTGATACATATGGATCCCTCCGAGATAACAATGTTTAAATGTGCACTGTGTACTTTTGAATCAAAGCGTAAGCGCGATCTTGGTAGGCACATACGTTTCGTACATGGCAATTCTTCAGAGAACACACTGTATAAATGTGGGTTATGTAGGTATAAAACAGGACATAAGCTCTATTTTAAACGACACGAGCTAACCCATACCAGCTCTGCcgggataaaaatgttcaagtgtgAGATGTGTGACTATGAGAGTTCACATAAGAACCATTTTATTGAACACCAATTAGTACACAAAGATCCCTCAGAGGTGATAAAGTTTAAGTGTGCACAGTGTACATTTGCGTCAAAGCGTAAACGTGATCTTAATAGGCATGTATCGTTTGTCCATGGCAATCATTCACAGAAAGCACTACTTAAATGTGGAGAATGTGAGTATGAAACAAGACATACACAATACCTTGCACGACATCAATTGACCCATAAGGGCCCTACAGAGATAACGATGGctaagtgtgaactgtgtaaaTACGAGACTAGACGTAAGAGTAATCTTAGGATGCACATGTTGACACATATGGATTCATCGAATGTGATGATGTTACAATGTGGATTGTGTGAGTTTGAGACGAAACTTGGATATAATCTTAGAAGGCACGTGTTGCTTAAACATTCAGAGGTACCAGTATATAAGTGCGATTCCTGTATGTATACGACGAAAGTTTTGTCTAGtctcaaaaaacataaaataattcataaaactCCAGCAGAATTGACAATGTTCAAGTGTGAAAGCTGTGAATTTGAAACGAAATATAAGGATTCTCTTAAGATGCATATGTTGACTCATAAAGATTCGACTGAGGTGACGATGTTCGCATGTGAAATGTGTCCTTTTAAGACAAAAATATAG
Protein Sequence: MNEKICRLCLQTVNGNHQEIKENVKNILNLNLNISEDTAMCIECRKNTQALFNFKSVCVDMTKRNIFFTDLKNEVTLDPVMIENTNNLESFRELKGDIRCSFCAESVVTESLTSLDESKENIFLVDILKKHIPELNFTNIEELLTCKSCLDEIQSVSSFLTKCWDVEEKISKYTEIEGTDDKGHIELKNVQQFVFQPVLEFKDESYHVHELGQIDDCIKEEFSIKTEAEIKYDIEVDDPELYIETEDADIKSEQIDCDSFEEPFTDHKNSFDVTVYKCETCTYETITKDHLNDHISTHKSHPGTKLFKCELCTFEGKHKHDLTRHIHLVHDNPLEKTSYKCGVCTYETKHKQYLKRHKLAHKKFKCDMCEYETKYKKHLSDHKLIHMDPSEITMFKCALCTFESKRKRDLGRHIRFVHGNSSENTLYKCGLCRYKTGHKLYFKRHELTHTSSAGIKMFKCEMCDYESSHKNHFIEHQLVHKDPSEVIKFKCAQCTFASKRKRDLNRHVSFVHGNHSQKALLKCGECEYETRHTQYLARHQLTHKGPTEITMAKCELCKYETRRKSNLRMHMLTHMDSSNVMMLQCGLCEFETKLGYNLRRHVLLKHSEVPVYKCDSCMYTTKVLSSLKKHKIIHKTPAELTMFKCESCEFETKYKDSLKMHMLTHKDSTEVTMFACEMCPFKTKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -