Basic Information

Insect: Stenurella melanura
Gene Symbol: -
Assembly: GCA_963583905.1
Location: OY757315.1:106384038-106388783[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.013 1.9 11.3 1.3 2 23 160 181 160 181 0.97

2 12 0.0049 0.7 12.7 1.9 1 23 189 211 189 211 0.99

3 12 0.0012 0.17 14.6 2.6 2 23 216 237 216 237 0.98

4 12 0.0053 0.75 12.6 3.9 1 23 277 299 277 299 0.98

5 12 0.014 2 11.3 5.8 1 23 307 329 307 329 0.98

6 12 5.1e-05 0.0073 18.9 2.5 1 23 338 360 338 360 0.99

7 12 0.035 5 10.0 0.6 1 23 364 386 364 386 0.96

8 12 0.00034 0.048 16.4 1.6 1 23 395 417 395 417 0.98

9 12 0.00088 0.13 15.0 0.7 1 23 426 448 426 448 0.98

10 12 0.0072 1 12.2 1.2 1 23 457 479 457 479 0.98

11 12 0.038 5.4 9.9 7.9 1 23 488 510 488 510 0.98

12 12 8.4 1.2e+03 2.5 2.7 1 23 519 541 519 541 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.013	1.9	11.3	1.3	2	23	160	181	160	181	0.97
2	12	0.0049	0.7	12.7	1.9	1	23	189	211	189	211	0.99
3	12	0.0012	0.17	14.6	2.6	2	23	216	237	216	237	0.98
4	12	0.0053	0.75	12.6	3.9	1	23	277	299	277	299	0.98
5	12	0.014	2	11.3	5.8	1	23	307	329	307	329	0.98
6	12	5.1e-05	0.0073	18.9	2.5	1	23	338	360	338	360	0.99
7	12	0.035	5	10.0	0.6	1	23	364	386	364	386	0.96
8	12	0.00034	0.048	16.4	1.6	1	23	395	417	395	417	0.98
9	12	0.00088	0.13	15.0	0.7	1	23	426	448	426	448	0.98
10	12	0.0072	1	12.2	1.2	1	23	457	479	457	479	0.98
11	12	0.038	5.4	9.9	7.9	1	23	488	510	488	510	0.98
12	12	8.4	1.2e+03	2.5	2.7	1	23	519	541	519	541	0.97

Sequence Information

Coding Sequence: atGGATAACCCAGAGTATGGCAATGGCAATATGAAAGTTGAGAATTCCGTTGGACTGGACTCTGCAGAGTTTGACATAAAATATGTTCCAACTGATATTGAGACTGAAATGGGGAAAGATATTGCAATGGTCACAGAAATAAAGCAATATTCTTTAATAGGCAAAGAAATTAACTCTACATTTCCATCAAACGTTGATGTACATAGTACAGAACTgaacgtcaaaaatgaagttaaaGATATTAAAGTCGAAGAGGAAGATGGTGTTAAGGTGGGAGAAATAGACAATATCTTTCTAAAAATAGAGAAGGAAGAAGTAGATACTTCGTATGAAAGTTGCCAGGAGCCTCTGGAAGATATGACATTGAACTTTGACAGTAACAATATGTTCCAGTGTGATATCAATTCCTCCATGGACTGTAAAATCAACCACAAAGAACTTACAACTTCTACAGTAGTCTCGGACAAAACATTGCGTGAGTGCAGCATATGCAGATTTCAGACCAAAGGAAAAATAAATTTGCGGAAGCACCTATTAACCCATAAGCCtccagaaataaaaatgtttaagtgtAACATGTGCACATACGAGGCAAAACGGAAGCAAACCGTCAGCCGGCACATGGAGACCCATAGAAACCCAGAAAAGTGCAAGAAATGTTCATATGAGACCAAACGAAAAGATTCCATGCAGATCCACATGTTAACTCACGAAAATCCCTCCGCAGTAAAAATGTTTAAGTGTGACTCGTGTTGTTATGAGACGATGCATAAAAGATACCTTACAGAACACTCATTGATACACAAAAGTCCCTCAGAGGTCACGATGTATAAGTGTGACATATGCTTGTACGAGACGAAAAAAAAGAAACATCTTAAACTACACATACAGAATCATAACACTTCCGAGGCAATAGTGCATAGGTGTCAAATGTGCTCGTTTGAGACTAAACATAAAGACTATCTTAAGACTCACATGCTCATTCATAAAAGTGCCTCGGAGctgacaatgtacaaatgtgaatTATGCACATATGAGACAAAACAGAAACGCAGTCTTAAGCGCCACATGCAGATCCATAAAGAGCCTTACAAATGTGAAGTGTGCGGGTATGAATCGAAACAAAAAATAACCTTCGATTTGCATGTGTTTATGCACAGCAGTCCTTCAGCTGTAGAAACGTATAAGTGCAACAATTGTCCTTATGAGACTGTACACAAAAAGTATCTTACTGATCACATGGCTGTTCATAGTGATCCTTCTGAAGTTGGGATATATAAGTGTAGTATATGCGAATACGTGGCGAAGAAAAGGAGGTCTCTCAGGGTACATTTACTATCACATAAAGATCCTTCAGAGATAACAATGTACAGATGTGAAAAATGTTCTTTTGAGAGTAAAGTTAAGTCTTACGTCAAAGCTCATATGTTGTCCCATGAGGACCCTTCAACTGTGCCAATGCATAAATGTGATATGTGTTCGTTTGAGACTAAGCACAAGAGAAATCTTAAACGCCATTTTCTGACCCATCAAGATCCTTCAGAGGTACCTATGTTTAGGTGTGAGTTTTGTTTCTTCGAAACAAAATACGAGAAGTATATGGGGAGGCATGTATTGAAACATAAAATGTGCCTGAAACAAAATGGAAAAATTGTTGAATGA
Protein Sequence: MDNPEYGNGNMKVENSVGLDSAEFDIKYVPTDIETEMGKDIAMVTEIKQYSLIGKEINSTFPSNVDVHSTELNVKNEVKDIKVEEEDGVKVGEIDNIFLKIEKEEVDTSYESCQEPLEDMTLNFDSNNMFQCDINSSMDCKINHKELTTSTVVSDKTLRECSICRFQTKGKINLRKHLLTHKPPEIKMFKCNMCTYEAKRKQTVSRHMETHRNPEKCKKCSYETKRKDSMQIHMLTHENPSAVKMFKCDSCCYETMHKRYLTEHSLIHKSPSEVTMYKCDICLYETKKKKHLKLHIQNHNTSEAIVHRCQMCSFETKHKDYLKTHMLIHKSASELTMYKCELCTYETKQKRSLKRHMQIHKEPYKCEVCGYESKQKITFDLHVFMHSSPSAVETYKCNNCPYETVHKKYLTDHMAVHSDPSEVGIYKCSICEYVAKKRRSLRVHLLSHKDPSEITMYRCEKCSFESKVKSYVKAHMLSHEDPSTVPMHKCDMCSFETKHKRNLKRHFLTHQDPSEVPMFRCEFCFFETKYEKYMGRHVLKHKMCLKQNGKIVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -