Smel064754.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757315.1:105440605-105449829[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.022 3.1 10.7 3.9 1 23 278 300 278 300 0.99 2 12 0.01 1.4 11.7 2.6 1 23 308 330 308 330 0.97 3 12 4.2e-05 0.0059 19.2 2.2 1 23 339 361 339 361 0.99 4 12 0.0021 0.3 13.8 3.6 1 23 370 392 370 392 0.98 5 12 0.091 13 8.7 2.0 1 23 401 424 401 424 0.95 6 12 0.071 10 9.0 3.0 1 23 433 455 433 455 0.98 7 12 0.0053 0.76 12.6 5.3 1 23 464 486 464 486 0.98 8 12 0.012 1.8 11.4 5.2 1 23 495 518 495 518 0.96 9 12 0.13 18 8.3 3.0 1 23 527 549 527 549 0.98 10 12 0.0096 1.4 11.8 4.7 1 23 558 580 558 580 0.96 11 12 0.0001 0.014 18.0 3.9 1 23 589 611 589 611 0.98 12 12 0.00051 0.072 15.8 1.3 2 23 621 642 620 642 0.97
Sequence Information
- Coding Sequence
- ATGGACGAAAAAATTTGCAGACTTTGCCTTCaaacaataaaagaaaattataaagaattaGGAGAACCTCTgcaaaatgtattaaaattgaatTTGGATATAACTATAGAAAGCGTGACATGTACTGAATGTACAAATAATATTCAAGTATTCTTTGATTTGAAATCTGCCTGTGCTAATATGAGTGTGAAGGCATTGCATTTGAACGACTTGAAGAATGATGTTAGTTCACATCGAGTACAAAACGAAGACACAAATAATCAGAACATAGTTGCAGAGACCAAAGTTGAAATAAGATGTAGCTTTTGTACAAAGTCAACTGAAGAAGAATTTCTTATATCACTACACGAATcaaaggaaaatatatttttggtaGATATCTTGGATAAATATATTCCAGAACTGaatttAAGTAATGTGGGAGAACTTCTAACTTGTGAAACCTGCCTTGATGGAATGAAAAGCGTTTCCAGTTTTTTAACGAGATGTTTGGACGTGGAagagcaaataaataaatatattgaaatagaaGGAACAAATGATAAAGGGCAGATagaattgaaaaatgtacaatttgcATTCAAACCATTGGTCAAATTTGAGGTTGAATCCTGCCTCGAAAATCAGACAGATGATCACAATCATGGAGACTTCACTGTGAAAACTGAAGATGAAataagtaatgaaatagaaatGGTTAAGTTAGAGCAGTTTATTAAAACAGAAGATAGGGATATGACATCAGAACAAAGTGAATATGACAGCTCTCCAGAACGACCTGCCGAAACCAAATTGAATAATGAACACAATAATTATTCAGACCTACCAGTATATAAATGTGATACATGTACATATGAAACGACTTCTGTGGAGCATCTACATACTCACTTAATTACCCATAAAAGTGGTTCAAGAATAATATTCACATGTGAAATGTGCCCATTTGAGAGTAAAAGCAAGCAGTATCTCAGACACCACATATCACTTCACAAAAGTCCTTCGGAAATAGCAAAATTTAAATGTGTAATATGTAAATATGAGACAGTACGAAAGTACACTCTTAAGAGACATATGTTGACTCACAAATGTACTTCAGAGGTAATAATGCATAAGTGTGACACTTGTAATTATGAGACAAATTTTAAGTACCAACTTAACGCACACCAGCTAACTCATAAAGACCCGTCACAGTTAACAATGTTCAAGTGTAAATTATGCACATTTGAGGCAAAACTTAAGAGATATCTCAATAGACACATGCTGTTTGCCCATGGAAATCCTGCACAAGCAACAATATATAAGTGTGCATCATGTACTTATGAAACAAGACATAAGCTATACCTTAAACGACACGTATTGGTCCACAAAAATCCTTCTGAACTAACAATGTATAAGTGTGACACTTGTACATATGAGACAAAACGCAGACAGCACCTTCGTAAACACAAATTAATTCACGAAGGTCCGAGAGAAATAACAATCTTCAAGTGTGAACTGTGTACGTGCGAGACCAAGCGTAAATGTGATCTTAACAGGCACATGTTGCTCATACATAATAATCCTGCCAATGCAACAGTATATAAATGTGGATCGTGTGCTTATGAAACAAAACATAAGCAGTATCTTAACCGTCACGAATTGAGCCACAAGATGCCGTCAGAGGTGACAATGCATAAGTGTGACATTTGTGCGTATGAGACGAAAACTAAATACCATCTTAAGAGACACAACTTAATTCACCAAggtccttcagaggtaacaatgttcAGCTGTGAATTGTGTACTTTCAAAACAAAACGTAAGAAGAATCTTACACGACATATGTTGACACATAAAAGTTCTTCGGAGGTGGAAAAggtcaaatgtaaaatttgtgaatttgaGACGATACATAAGTATGCTCTTAAGAGACACATGCTAATTCACAATCGTGTAAGTAGCAATGTAAAAGTGTAA
- Protein Sequence
- MDEKICRLCLQTIKENYKELGEPLQNVLKLNLDITIESVTCTECTNNIQVFFDLKSACANMSVKALHLNDLKNDVSSHRVQNEDTNNQNIVAETKVEIRCSFCTKSTEEEFLISLHESKENIFLVDILDKYIPELNLSNVGELLTCETCLDGMKSVSSFLTRCLDVEEQINKYIEIEGTNDKGQIELKNVQFAFKPLVKFEVESCLENQTDDHNHGDFTVKTEDEISNEIEMVKLEQFIKTEDRDMTSEQSEYDSSPERPAETKLNNEHNNYSDLPVYKCDTCTYETTSVEHLHTHLITHKSGSRIIFTCEMCPFESKSKQYLRHHISLHKSPSEIAKFKCVICKYETVRKYTLKRHMLTHKCTSEVIMHKCDTCNYETNFKYQLNAHQLTHKDPSQLTMFKCKLCTFEAKLKRYLNRHMLFAHGNPAQATIYKCASCTYETRHKLYLKRHVLVHKNPSELTMYKCDTCTYETKRRQHLRKHKLIHEGPREITIFKCELCTCETKRKCDLNRHMLLIHNNPANATVYKCGSCAYETKHKQYLNRHELSHKMPSEVTMHKCDICAYETKTKYHLKRHNLIHQGPSEVTMFSCELCTFKTKRKKNLTRHMLTHKSSSEVEKVKCKICEFETIHKYALKRHMLIHNRVSSNVKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -