Basic Information

Insect: Stenurella melanura
Gene Symbol: -
Assembly: GCA_963583905.1
Location: OY757315.1:105325597-105342285[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.041 5.9 9.8 0.6 1 23 316 338 316 338 0.99

2 13 0.00039 0.055 16.2 4.7 1 23 347 369 347 369 0.98

3 13 0.0063 0.9 12.4 1.4 1 23 378 401 378 401 0.95

4 13 0.0083 1.2 12.0 2.7 1 23 410 432 410 432 0.98

5 13 0.28 40 7.2 1.2 1 23 441 463 441 463 0.98

6 13 0.0017 0.24 14.1 1.2 1 23 476 498 476 498 0.98

7 13 0.12 16 8.4 6.7 1 23 507 529 507 529 0.99

8 13 0.53 76 6.3 7.9 1 23 538 560 538 560 0.99

9 13 0.011 1.6 11.5 2.0 1 23 569 592 569 592 0.96

10 13 0.074 10 9.0 2.2 1 23 601 623 601 623 0.97

11 13 0.00028 0.04 16.6 2.9 1 23 632 654 632 654 0.98

12 13 0.0026 0.37 13.6 1.8 1 23 663 685 663 685 0.99

13 13 0.02 2.9 10.8 4.9 1 23 694 716 694 716 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.041	5.9	9.8	0.6	1	23	316	338	316	338	0.99
2	13	0.00039	0.055	16.2	4.7	1	23	347	369	347	369	0.98
3	13	0.0063	0.9	12.4	1.4	1	23	378	401	378	401	0.95
4	13	0.0083	1.2	12.0	2.7	1	23	410	432	410	432	0.98
5	13	0.28	40	7.2	1.2	1	23	441	463	441	463	0.98
6	13	0.0017	0.24	14.1	1.2	1	23	476	498	476	498	0.98
7	13	0.12	16	8.4	6.7	1	23	507	529	507	529	0.99
8	13	0.53	76	6.3	7.9	1	23	538	560	538	560	0.99
9	13	0.011	1.6	11.5	2.0	1	23	569	592	569	592	0.96
10	13	0.074	10	9.0	2.2	1	23	601	623	601	623	0.97
11	13	0.00028	0.04	16.6	2.9	1	23	632	654	632	654	0.98
12	13	0.0026	0.37	13.6	1.8	1	23	663	685	663	685	0.99
13	13	0.02	2.9	10.8	4.9	1	23	694	716	694	716	0.98

Sequence Information

Coding Sequence: ATGACAGTGAAGCCGGGCCATCGGGTTTACAGACAAATATTAGGCGAAATAACGAATAAAGAAGAAAGTATGACTCCAATTGAAATGGATACCACAGCACCATCTGAAACACCAAGTGCCAAGCCAGAAGTCGAGGCAGAAACTCCTTCAGAGGCAGAAACTCCTTTCAAGGTAGAAACTTCTTCCGAGGCTCAAGTACAGTTTATAGCCATGTTGGATGCAGAAAACTATTTCCTTAAAGACGAAGACATGAGTATATCGAAGGATACTGTAAAGTGTACGGAATGTATAAATAACCTACAAGTATTGCTTAACTTGAAATCAACTTGTGATGGTATGAGGGAGACGAGAGATAATGCTAAAAATACACATAACCTAAAATCAGTTAGAGTGCCCAAGGAAGAAATAAGATGtggtttttgctcaaacttaGCTGGAAAAGACCTCATTATATTACACGAATCGAAGGAAAATATGTTCTTGGTGGATACGTTGGAGAAACATATTccagaaatgaatttTGGTAGTGCTGAAGATCTGTTAACTTGTGAAATCTGTCTTGATAGTATGCAAAGCATTTCAAGATTTTTAAATAACTGGTTGTATGTGGAAGAGGAGATACGTAAATATTCTGAAAATGAAGGAGTGGATGACAAAGGACAGATAGATTTATGGAACGTACAACAATTTATAATGAATCCTACAGTAAAAGTTGAAGGTGGCGTAGATAAATTATGGCAAACATATGATCAGGTTCAAGACACATACGTCATGAAAGCAGAAGTTGAAGAGGAAGCCAAAATAAAATATGAAGTAGAAGGGGATGAGCTCGAagcaattattaaaaaagaagatGACATTAAATCAGAACAACAAGATTGTGATGGTTTTGAAGAATCAACTGCCGATTTCAAATTGGATAATGATCCTTTGGAGATACCACAATACAAATGTGCAGTGTGCCAGTTTGAGACTAAATTTAGAGGAAGTATTATTCGTCATATCTCGACACATAAAAAATTTGTGTCCAAAACAGTATATAAGTGCGACACCTGTACATATGAGACGACTCATAAGAGTCATCTGAACAACCACATATTGATCCATATTTGTAATAttgatataaaaatgtttaaatgtgaattgTGTACATTTGAAACAGAACATAAGAGTGGCCTTACGAATCACATGTCTGAGGTGCATACAAATGCCTCAGAATTACCACTTTATAACTGTGAAATATGCACATTCAAGACAGAGCATAAGGGTACTCTTAGGTACCACATGTTGATGCATAATGGTCCTTCAGGGATAATGACGTTCAAGTGTGAACTTTGTGCATTCAAGACATCAGTTGAAGACAAATTTACGAACCACCTGTTAAAGCATAAAAGCCCCTCAGATACCTCTGAGTTTGTCGCATTATTCAAGTGTGAAATGTGTACTTTCACGGCAGACCGTAAGAGTAGACTCACGAACCATATGCTAGTACATAAAAGTGCCCCAGAGATAACAATGTATAAGTGTGAAAAGTGTAAATTCGAGACAAAACGTAAGCGTTCTCTTAGATGCCACATGTTGACTCATGTAGATCCGTTACATGCAGCAAAATTCAAGTGTGAAATATGTAAATTTGAGACAAAACGTAAGTGTTCTCTTAGGTGCCACATGTTGACGCATGTAGATCCCTTGTATGCAACAATATTCAAGTGTGGACTGTGTACATTCGAATCAAAACATAAGCCTGATCTTAATAAACACATGTTACTATCTCATAAAGATTCTTCGGAGACAGCGCTGTATAAATGTGACTCCTGTATGTTTGAGACAACTCGTCAGTCGTATCTTAACAAGCATAAATTGATCCATAAGAGTCCCTCGGAGGTAGTAATGTTCAAGTGTGAATTGTGTCCACACCAGACAAAACGTAAGTATGAGTTAAAAGTGCACATGATAAAGCATAAAAATTCCTCAGAGACAACGATGTTCAAGTGTGGAGTGTGTACGTTTGAGACAAAACATAAGGGTTCTCTTAATGGCCACATGTTGACTCATAAAGAACCCTCAGAGATGACCATGTTCAAGTGTCAAATTTGTACGTTCGAGACAAAGCATAAGCGTTCACTTTTGTACCACATGTTGAGACATAATGGCCCCTGA
Protein Sequence: MTVKPGHRVYRQILGEITNKEESMTPIEMDTTAPSETPSAKPEVEAETPSEAETPFKVETSSEAQVQFIAMLDAENYFLKDEDMSISKDTVKCTECINNLQVLLNLKSTCDGMRETRDNAKNTHNLKSVRVPKEEIRCGFCSNLAGKDLIILHESKENMFLVDTLEKHIPEMNFGSAEDLLTCEICLDSMQSISRFLNNWLYVEEEIRKYSENEGVDDKGQIDLWNVQQFIMNPTVKVEGGVDKLWQTYDQVQDTYVMKAEVEEEAKIKYEVEGDELEAIIKKEDDIKSEQQDCDGFEESTADFKLDNDPLEIPQYKCAVCQFETKFRGSIIRHISTHKKFVSKTVYKCDTCTYETTHKSHLNNHILIHICNIDIKMFKCELCTFETEHKSGLTNHMSEVHTNASELPLYNCEICTFKTEHKGTLRYHMLMHNGPSGIMTFKCELCAFKTSVEDKFTNHLLKHKSPSDTSEFVALFKCEMCTFTADRKSRLTNHMLVHKSAPEITMYKCEKCKFETKRKRSLRCHMLTHVDPLHAAKFKCEICKFETKRKCSLRCHMLTHVDPLYATIFKCGLCTFESKHKPDLNKHMLLSHKDSSETALYKCDSCMFETTRQSYLNKHKLIHKSPSEVVMFKCELCPHQTKRKYELKVHMIKHKNSSETTMFKCGVCTFETKHKGSLNGHMLTHKEPSEMTMFKCQICTFETKHKRSLLYHMLRHNGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -