Smel064778.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenurella melanura
Gene Symbol
-
Assembly
GCA_963583905.1
Location
OY757315.1:105848134-105863385[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.008 1.1 12.0 2.9 1 23 387 409 387 409 0.98
2 16 0.012 1.8 11.4 3.7 1 23 449 472 449 472 0.95
3 16 0.11 16 8.4 1.3 1 23 481 503 481 503 0.97
4 16 0.0029 0.42 13.4 1.8 1 23 512 534 512 534 0.98
5 16 0.88 1.2e+02 5.6 3.3 1 23 543 565 543 565 0.97
6 16 0.00098 0.14 14.9 2.2 1 23 574 596 574 596 0.98
7 16 0.0039 0.56 13.0 3.6 1 23 605 628 605 628 0.98
8 16 0.00043 0.061 16.0 1.4 1 23 637 659 637 659 0.98
9 16 0.0048 0.68 12.7 1.4 1 23 668 690 668 690 0.98
10 16 0.32 46 7.0 4.5 1 23 699 721 699 721 0.97
11 16 0.0044 0.63 12.8 0.9 1 23 730 752 730 752 0.98
12 16 0.0015 0.22 14.3 1.2 1 23 761 783 761 783 0.98
13 16 6.7 9.5e+02 2.8 5.2 1 23 792 814 792 814 0.98
14 16 0.00054 0.077 15.7 1.0 1 23 823 845 823 845 0.98
15 16 0.028 4 10.3 3.3 1 23 854 877 854 877 0.97
16 16 0.0011 0.15 14.8 5.1 1 23 886 908 886 908 0.99

Sequence Information

Coding Sequence
ATGGAGGGAAAAGTTTGCAGACTTTGTCTTCAAACTATAAAGGAAAATTATCAGCAGTTAGGAGGAACTTTGAAAAACAtcttaaaattgaaTTCAGATATATTTAAGTACACGGTGGCATGCATTGAATGTACGAATAACCTCCAAGTATTCCTTAATTTGAAATCCACCTGTGTTGGTATAAGGAAGAGAGAGTCGCTTAAAGCAAATCCAAGAAACGATGTCAGCTTGGATCCAGTAAATactcaaaatagaaaaaatatagaGCCAGTTACAGAACTCAAAGATGAGATAAGATGTAGTTTTTGTAACAAGTCAGCTGGAAAAGAAGACTTTATATCATTAAACGAGTCAAAGGAAATGATGTCCTTGGTGGATAATTTACAGAAACATATTCCAGAACTGaatGTTAGTAATAATGGACAACTTTTATCTTGTAAAACCTGTCTTGATGGAATGCAAGGTGTCTCAAGTTTTTTAACAAACTGTTTGGAAGtggaagaaaaaataactaaatatattgaaatagaGGGAACGGATGATAGGGGACAGGTAGAATtacagaatgtacaacaatttatATTCAGACCAACATTAAAATTTGAGGGGCAATCCTGCCACATAAATGCAACAATCCAGGCACATGATATCATTCGAGAAGAATTTGCCATAAAAGGTAAAAGTGCAATAACATATGAAATAGAAGCAGATAGCCTGGACTCATttgttaaaaatgaaaatgtcgaTTTTGAATCAAAACATGTTATTAAATCTGAAACTGTTGATGATAAATATGACGATAGTATTAAATCGGAAGATGTTGATACTAAATCAGATGTTGATGATGTTTTTATGGAATCAGAAGATGATATTAATTcagaatatatttatattaaatctgaagataatactaaattaaaAGATGATATTAAATTGGAGGAAGTTGATATCAAATCAGAAGATATTGATATGAAATTAGAGGAAATCGATCATGATAGttttaaggAACCGTCTGTCAAACTCAATTTGGATTATGATCACAACAAGTCTTTAGGCATAACAGTGCATAACTGTGATATGTGCACATATGAGACAACACATAGGGATCTTCACAATGATCACTTATCAACCCATAGAAGTCATAGaggaataaaaatatacaagtgTGGCTCGTGTGAATATGAGACAAAACATAGGGCTAACTTTAAGAAACACTTATTAGTCCATAAAAGTCCTTTAGAGTTACCAATGTTCAAGTGTGATATGTGTTCATATGAGTCAAAATGTAAGCAACATCTAGATCGACACAAGATGATCCATAAAAGCATATCGGAGGTagaaatgtttaaatgtgaaagATGTGAATTTAAGACAAAACGTAAGGATAATCTTAACACACACTTTTTGTCCAGACATAAAAGTATTTCAGAGATAAAAGTTTTCAAATGTGAATTTTGTGAATTTGAGACTAAATATAAGAAATCTCTTGAGGGGCATTTGTTGCTCCATAAAAGTTCTTCAGAGATAACAATGTTCAAATGTGAAATGTGTGAATTCGAGACAAAATATAAGAATTCTCTTAGGAAGCACTTGCTGGTCCACAAAAGTATTTCAGAGATAATGATGTTCAAGTGTGAAATGTGTGAATTCGAGACAAGACATAAGAGATATATGAATCTACACAACATGGTCCATAAAAGTACATCGGAGTTAGAAATGTTTAAATGTGATATGTGTGAATTCCAGACGAAGCGTAAGAATAGTCTTAGGAGACACTTGTTGATCCACAAAAGTTCCTCAGAGGTAGTAATGTTCAAGTGTGAATCATGTGACTATGAATCAAAACATTGGTCTACTTTTAAGACACACTTAAAAATGCTCCATAGAAGCTCTTCGGAGATagaaatgtttaaatgtgaattttgcGATCTTGAGACGAAATATAAGGATTCTCTTAAGAAGCACTTGTTGGTCCATAAGAGTCCCACAGAGATAACAATGTTCAAGTGTGAATTATGTGACTATgagacaaaatataaaaattctgtTAAGAAGCACTTGTTGGTGCATAAAAGTCCTTCGGAGTTAACAATGTTCAATTGCGAAGTATGTGAATTTAAGACAAGATATAAGAGAAGTTTGCACCAGCACAAAATCACTCATGAAAGTACATTGGATATTACAAAGTTTAAATGTAAATTGTGTGAATTTGAGACAATACGTATGGATTATCTTAAGAAGCACATCTTGGTCCATAAAAATCTTTCAGAGTTAACTATGTTCAAGTGTGAAATGTGTGAATTCGAGACAAAATATAAGGCTTCTCTTAAGAAGCACTTGTTGATCCATAAAAGTCCTTCAGAGCTGACAATGTTCAAGTGTGAAATGTGTACATATGAGTCAAAATGTAAGAAATATCTGAATCAACACAAGATGATCCATAAAAGTATATTGgagttaaaaatgtttaaatgtgataTGTGTGAATTCGAAACCAAGCGTAAGGATGTTCTTAGGAGACACATGTTGATCCACAAAAGTCCCTCAGAGGTAGAAATGTTCAAGTGTGAATCATGTGGCTATGAATCAAAATATAGGACTACTTTTAAGAGGCACTTAGAACGGTTCCATAAGAGCTCTTCGGACGTAATGATGTTCAAATGTGCGAAGTGTACATTTGAGACTAGATATAAGAGTCATCTGAACCAGCACATGATGACCCATAAAAGTGTTGAAGTGTGCAATGTGTGA
Protein Sequence
MEGKVCRLCLQTIKENYQQLGGTLKNILKLNSDIFKYTVACIECTNNLQVFLNLKSTCVGIRKRESLKANPRNDVSLDPVNTQNRKNIEPVTELKDEIRCSFCNKSAGKEDFISLNESKEMMSLVDNLQKHIPELNVSNNGQLLSCKTCLDGMQGVSSFLTNCLEVEEKITKYIEIEGTDDRGQVELQNVQQFIFRPTLKFEGQSCHINATIQAHDIIREEFAIKGKSAITYEIEADSLDSFVKNENVDFESKHVIKSETVDDKYDDSIKSEDVDTKSDVDDVFMESEDDINSEYIYIKSEDNTKLKDDIKLEEVDIKSEDIDMKLEEIDHDSFKEPSVKLNLDYDHNKSLGITVHNCDMCTYETTHRDLHNDHLSTHRSHRGIKIYKCGSCEYETKHRANFKKHLLVHKSPLELPMFKCDMCSYESKCKQHLDRHKMIHKSISEVEMFKCERCEFKTKRKDNLNTHFLSRHKSISEIKVFKCEFCEFETKYKKSLEGHLLLHKSSSEITMFKCEMCEFETKYKNSLRKHLLVHKSISEIMMFKCEMCEFETRHKRYMNLHNMVHKSTSELEMFKCDMCEFQTKRKNSLRRHLLIHKSSSEVVMFKCESCDYESKHWSTFKTHLKMLHRSSSEIEMFKCEFCDLETKYKDSLKKHLLVHKSPTEITMFKCELCDYETKYKNSVKKHLLVHKSPSELTMFNCEVCEFKTRYKRSLHQHKITHESTLDITKFKCKLCEFETIRMDYLKKHILVHKNLSELTMFKCEMCEFETKYKASLKKHLLIHKSPSELTMFKCEMCTYESKCKKYLNQHKMIHKSILELKMFKCDMCEFETKRKDVLRRHMLIHKSPSEVEMFKCESCGYESKYRTTFKRHLERFHKSSSDVMMFKCAKCTFETRYKSHLNQHMMTHKSVEVCNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-