Basic Information

Insect: Stenurella melanura
Gene Symbol: -
Assembly: GCA_963583905.1
Location: OY757309.1:193895079-193896212[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 8.4 1.2e+03 2.5 0.2 2 23 64 85 63 85 0.79

2 8 0.007 0.99 12.2 2.9 1 22 120 141 120 142 0.85

3 8 5.4e-05 0.0077 18.9 4.6 1 23 148 171 148 171 0.98

4 8 0.00032 0.046 16.4 3.2 1 23 183 206 183 206 0.93

5 8 0.0016 0.23 14.2 3.5 3 23 219 239 218 239 0.99

6 8 3.1e-06 0.00044 22.8 0.7 1 23 245 267 245 267 0.98

7 8 0.00028 0.039 16.6 2.5 1 23 273 295 273 295 0.98

8 8 1.5e-06 0.00021 23.8 0.4 1 22 301 322 301 322 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	8.4	1.2e+03	2.5	0.2	2	23	64	85	63	85	0.79
2	8	0.007	0.99	12.2	2.9	1	22	120	141	120	142	0.85
3	8	5.4e-05	0.0077	18.9	4.6	1	23	148	171	148	171	0.98
4	8	0.00032	0.046	16.4	3.2	1	23	183	206	183	206	0.93
5	8	0.0016	0.23	14.2	3.5	3	23	219	239	218	239	0.99
6	8	3.1e-06	0.00044	22.8	0.7	1	23	245	267	245	267	0.98
7	8	0.00028	0.039	16.6	2.5	1	23	273	295	273	295	0.98
8	8	1.5e-06	0.00021	23.8	0.4	1	22	301	322	301	322	0.97

Sequence Information

Coding Sequence: ATGCTCCTAAGTGAAGGCAGTAAAGATGATGATCCTACATGGGAACCTAGAATTAGTAGAAAGAAGCCTCAGAAAGAGAATAATGTTAACACAAACTCTAAGCCCACCAAAGAATCCCGAGCATCGAAACGAAAGTCGAATAAGCCGAAGAAAATAGATTTCGATCCAGTCAAATTAGACGAGGCCTTAATTTGTAGTATTTGTAGTAATTCATATGAAACCAATATAGACTATGCCTTCCATTCAATCACTCATAGTAACGATAACAAATTTTCTTGTCATTTCTGTGACTAcagaacaaattgtaaatatcGTACAGAAGCTCATGTAAGAAACCATGAAGGTACGGGAAGAAAATTCAAATGCGAAATGTGTAACAAGACATTCAGGAAAAGCACTTATGCAGCTGAACATAAATATTTCCATACAGGGGAAAAACCTTTTCAGTGTGAAATTTGCGGAAGACATTTCATGTATTCCAAAAGTTTGGCACATCATCGCCGTATGTCACATTATGTAATCCTAACAGGGAAACCTTTACAAAAATATGACTGTGAAAAGTGCAACAAACACTACAAATCACAGTCTGGCTTACTCAGACATAATTCCATGTATCACAAGGATCCTACTAGGGGTGGGGGATTGTCCGTGCTCTGTGACATATGCGGTAAAAGACTATcttgtaaatataaattaaaattgcaCATGAGAACCCACACAGGCTACAAGCCGTTCGTTTGTCCTTTTTGTTCAAAATCTTTTACAAATAAGGATCAGATGGCGTCTCACGAACGTGTGCACACTGGTGAGAAACCGTTCTGCTGCAAGTTTTGCGGGAAAGCGTTCGCCCAATCTGCTCCTTATCGATATCACGTTAAAACCCATACTGGCGAGCGAAAATACGTCTGTCCGCGTTGTACTAAATCATTCATATCTAAAAGTAATATGAGAATACATATAAGAACCTGTAACATAATCTTTGTAAAAAGTGAGTAG
Protein Sequence: MLLSEGSKDDDPTWEPRISRKKPQKENNVNTNSKPTKESRASKRKSNKPKKIDFDPVKLDEALICSICSNSYETNIDYAFHSITHSNDNKFSCHFCDYRTNCKYRTEAHVRNHEGTGRKFKCEMCNKTFRKSTYAAEHKYFHTGEKPFQCEICGRHFMYSKSLAHHRRMSHYVILTGKPLQKYDCEKCNKHYKSQSGLLRHNSMYHKDPTRGGGLSVLCDICGKRLSCKYKLKLHMRTHTGYKPFVCPFCSKSFTNKDQMASHERVHTGEKPFCCKFCGKAFAQSAPYRYHVKTHTGERKYVCPRCTKSFISKSNMRIHIRTCNIIFVKSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -