Smel064062.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757315.1:98008745-98010457[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00023 0.033 16.9 5.7 1 23 13 35 13 35 0.99 2 17 0.12 17 8.3 0.3 1 23 44 66 44 66 0.97 3 17 0.064 9.1 9.2 0.5 1 23 105 127 105 127 0.97 4 17 0.0031 0.43 13.3 1.1 1 23 136 159 136 159 0.87 5 17 0.014 2.1 11.2 1.5 1 23 168 190 168 190 0.96 6 17 0.23 32 7.5 2.8 1 23 198 220 198 220 0.96 7 17 0.003 0.43 13.4 2.4 1 23 229 251 229 251 0.98 8 17 0.0068 0.96 12.3 3.2 1 23 260 283 260 283 0.90 9 17 0.0041 0.58 12.9 0.1 1 23 292 314 292 314 0.97 10 17 0.0068 0.97 12.2 1.0 1 23 322 344 322 344 0.95 11 17 0.052 7.4 9.5 1.4 1 23 353 375 353 375 0.97 12 17 0.043 6.1 9.7 4.9 1 23 384 407 384 407 0.89 13 17 0.03 4.2 10.2 1.0 1 23 416 438 416 438 0.96 14 17 0.14 20 8.1 7.2 1 23 445 467 445 467 0.96 15 17 0.023 3.2 10.6 1.2 1 23 476 498 476 498 0.98 16 17 0.027 3.8 10.4 1.3 1 23 507 529 507 529 0.97 17 17 0.22 31 7.5 4.7 1 23 537 559 537 559 0.97
Sequence Information
- Coding Sequence
- ATGCTGATTCATCGAGATATTTCAGAAGTAACAATCTACAAGTGTAACCTGTGTCTATATTGTACGAAACGGAAAATTAGTCTTAAGAACCATATGCGCACTCATCAAGATCCTTCAGAAATCAAAATGTATAACTGTGAGAAGTGTCCATTCGTAACAAAGTGGAAAGAGAGCCTTAATGCTCATTCCCAAGTCCATGAAGATCGTTCAAAAGTAGTGTATGCATGTGATACTTGTTCGTTTCAGACAAAATGCAGGAATAGACTTAAGAGACATGGGTTACTCCACAAATGCAAACCTGACCTAGGTGTGTACATATGTAAAACTTGTTCATTTCAGGCAAACCGTAAAGACAAGCTTATTTCACATGTGTTGATACACCGACCACTTTCAAATGTAACTGTGTATAAGTGTAACCTGTGTTCGTATTCCACAACAACTAACAAAGGTAATCTGGCAGTTCATATGCGCCGTCATCAAAATCCTTCATATGTCCAAATGCACAACTGTCAAAAGTGTCCCTATACTGCAAACCGTGAAGCGAGTCTTAAATCCCACTCTCGAATCCATGAGGATCTCTCAGGAGCGGTATACACATGTAATACTTGCTCATATCAGACAAAAGTTAAGGATAGATTTAAAAGACATGAGTTACTTCATAAATACGTGTCAGATAGAGGCATGTACAAATGCAAAACTTGTTCATTTGAGACAAACCGTAAAGACAAGTTTATTCGACATATGGTGATTCACAAACCACTTTTACAAGTAACTGTGTTTAAATGTGAACTGTGTTCGTACACCACAAGAACTAATAAACGTAATCTGACAAGGCATATGCGCCTTCATGAAATTTCTTCGGATATCAAAATGTATAACTGTCAAGAGTGCCCATATGCTGCGAAGTCTAAGGCAGCTCTTAAAGCTCATTCCCAAATCCATGAAAATCTTTCAGGAGCAATATACTCATGTGATATTTGTTCTTTTCAGACAAAACGCAAGGGAAGTCTTAAAACACACGGATTGCTCCATCAATGCATGCCAGATATAGGAGTTTACATCTGCGAAACTTGTTCCTTCCGGACGAACTACAAGAACAGGCTTATCAAACATATGGTGATGCATAAACCACTTTCACAAGTTATAGTGCATAAGTGTGAACTGTGTTCATATACCACAAGACGTGCTAAGAGTCATCTAGTAAGGCATATGCGCACTCATCAAGATCCTTCTGATGCCAACTTGTACAACTGTGAAAAATGTCCATACATGACGAAGTGGAGAGGTAATCTTAAGCGTCATTCCTTATCCCATGATCTTTCAAAAGCAGTATATACATGTCATACTTGTTCGTTTCGGACAAGACATAAGAACACACTTACAAAACACGAATTACTTCATCAAGATGTACCGGATCTAGGGTGGTACATATGTGATACTTGTTCGTTCCAAACAAACCGTAAGAACAAGCTCATTCAACATGTATTGACTCATCAACCACTTTTAGACATAACATTCCATAAATGTCAACAGTGTCCATACATAACAAAGTGGCCGGATAATCTTAAGCGTCATTCTCAAATCCATGAAAATCTTTCAGGAGCAATGTACAGATGTAACACTTGTTCATTTCAGACGAAAAGCAAGCATAGACTTACAAAACACGGATTAATCCATAAAGAAGGAATCAGAGATAGAAATATGCACGTTTGA
- Protein Sequence
- MLIHRDISEVTIYKCNLCLYCTKRKISLKNHMRTHQDPSEIKMYNCEKCPFVTKWKESLNAHSQVHEDRSKVVYACDTCSFQTKCRNRLKRHGLLHKCKPDLGVYICKTCSFQANRKDKLISHVLIHRPLSNVTVYKCNLCSYSTTTNKGNLAVHMRRHQNPSYVQMHNCQKCPYTANREASLKSHSRIHEDLSGAVYTCNTCSYQTKVKDRFKRHELLHKYVSDRGMYKCKTCSFETNRKDKFIRHMVIHKPLLQVTVFKCELCSYTTRTNKRNLTRHMRLHEISSDIKMYNCQECPYAAKSKAALKAHSQIHENLSGAIYSCDICSFQTKRKGSLKTHGLLHQCMPDIGVYICETCSFRTNYKNRLIKHMVMHKPLSQVIVHKCELCSYTTRRAKSHLVRHMRTHQDPSDANLYNCEKCPYMTKWRGNLKRHSLSHDLSKAVYTCHTCSFRTRHKNTLTKHELLHQDVPDLGWYICDTCSFQTNRKNKLIQHVLTHQPLLDITFHKCQQCPYITKWPDNLKRHSQIHENLSGAMYRCNTCSFQTKSKHRLTKHGLIHKEGIRDRNMHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -