Basic Information

Insect: Stenurella melanura
Gene Symbol: -
Assembly: GCA_963583905.1
Location: OY757315.1:106300993-106307125[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0055 0.78 12.6 2.1 1 23 147 169 147 169 0.97

2 15 0.15 22 8.0 2.2 2 23 179 200 178 200 0.97

3 15 0.0078 1.1 12.1 0.9 1 23 209 231 209 231 0.99

4 15 0.082 12 8.9 2.0 1 23 235 257 235 257 0.98

5 15 0.0028 0.4 13.5 2.1 1 23 266 288 266 288 0.99

6 15 0.012 1.7 11.5 2.2 1 23 297 319 297 319 0.99

7 15 0.0036 0.52 13.1 1.7 1 23 323 345 323 345 0.99

8 15 0.036 5.1 10.0 5.0 1 23 354 376 354 376 0.98

9 15 0.017 2.3 11.0 1.8 1 23 385 407 385 407 0.99

10 15 0.011 1.6 11.5 1.0 1 23 416 438 416 438 0.99

11 15 0.016 2.3 11.1 2.9 1 23 447 469 447 469 0.97

12 15 0.0024 0.35 13.7 3.6 1 23 478 500 478 500 0.98

13 15 0.12 17 8.3 2.1 1 23 510 532 510 532 0.97

14 15 0.0071 1 12.2 1.3 1 23 537 559 537 559 0.98

15 15 0.0012 0.17 14.6 0.3 1 23 568 590 568 590 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0055	0.78	12.6	2.1	1	23	147	169	147	169	0.97
2	15	0.15	22	8.0	2.2	2	23	179	200	178	200	0.97
3	15	0.0078	1.1	12.1	0.9	1	23	209	231	209	231	0.99
4	15	0.082	12	8.9	2.0	1	23	235	257	235	257	0.98
5	15	0.0028	0.4	13.5	2.1	1	23	266	288	266	288	0.99
6	15	0.012	1.7	11.5	2.2	1	23	297	319	297	319	0.99
7	15	0.0036	0.52	13.1	1.7	1	23	323	345	323	345	0.99
8	15	0.036	5.1	10.0	5.0	1	23	354	376	354	376	0.98
9	15	0.017	2.3	11.0	1.8	1	23	385	407	385	407	0.99
10	15	0.011	1.6	11.5	1.0	1	23	416	438	416	438	0.99
11	15	0.016	2.3	11.1	2.9	1	23	447	469	447	469	0.97
12	15	0.0024	0.35	13.7	3.6	1	23	478	500	478	500	0.98
13	15	0.12	17	8.3	2.1	1	23	510	532	510	532	0.97
14	15	0.0071	1	12.2	1.3	1	23	537	559	537	559	0.98
15	15	0.0012	0.17	14.6	0.3	1	23	568	590	568	590	0.98

Sequence Information

Coding Sequence: ATGTTAGGAACAAACTCCAAGCAAACACTTTTATGCCATAAAACTGATATGAAGGTTGAAAACTTTATAGAACCAGAGAATGAAGAGTTACACTTCAAGGGTGTATTAAATCATATTAAGATTGAAATTGAAGAAGATATGATGACAGAAATAAAAACAGAAGACAAAGAAATTAAACTTGAAGTTGCAGAGCTTGACATAAAAACCGAAGAAAACTATATTGAAGATATTAAGAAGGCAGAATCAATAAACAAACACTCGTTAAAAATAGAAGAGACAGAAATCAGTGCGATATATGAAAGCCAAGAATCTTCTGCAGACATTACAGCGAATAATGGTGACAAACATGTAATCCAAAATATAACGATTTCATCcagaaatgttaaaattgaaGATAGAGATGATGTAACTCAAGAGGATCTGTCAGGTAGAACAATGCATCAATGCAACAAGTGTTTATTTACGACGGGACAAAGGGCAAATCTCCAGCAACACATGCTGCTGCACAGAAATCCTTCAAAGGTAACCATGTCCAAGTGTAAAGTATGTACATtcgaaacaaaatataaaagttatctCAAGTTTCACATGTTAGTTCATAAAGCTCCTGCAGAAGTTACAATGTATAAATGTGGAATATGTACATACGAGTCGAAGCTGAAGAGGGTTCTTAAGAGACACATAGAGACTCATAATGTTCCCTACAAATGTGGGGTATGTAAGTATGAGACAAAACAGAAAACAACGTTTGATTTGCATACATTGAGCCACACGGATCCTTCAGCAGTAGAAACGTACAAATGCGGAGTTTGCTCATATGAGACAATACAGAAAAGACACTATAAGGATCACATGTTAGTTCACAAAAAACCTTCAGAGTTAGAGACGTATAAGTGTGTCCTCTGCAAGTACGAGACAACAATAAAAAGATACCTCACACAACATCTCCGGTCCCACAATGTTCCCTACAAATGTGAGATATGTAAGTATGAGACGAAACAGAAAACAATGTTTGATTTGCATATGTTGAGCCACACTGATCCTTCAGCAGTAGATACGTACAAGTGCAGAGTTTGCTCGTATGAGACGATACACAAAAAACATTTTAAGGACCACATATTGGTTCACAAAAATTCTTCAGAGTTAAAGACGTATAAATGTGCCCTCTGTAAGTACGAGACGACGATAAGAAGATATCTCACGCAACATCTGCAGACCCATAAAGATCGTTCAGACTtcacaatgtacaaatgtgaaaAGTGTGCTTATGAGACGAGAATTAAATCTTACATTAAGGTGCATATGATGACTCATCAAAATCCTTCTGAGGTATCGATGCATAAATGCGACATATGCTCATATGAAACGAAATATAAAAATAGCCTTAATGCACACAAGTTGAACCATAAAAGTCCTTCAGAGATAGAAATGTTTAAGTGTGAACTATGTACGTATGAGACGAGGCATAGAAAATACCTTAAAGATCACATGTTGGTCCATAAGGGTCCCTtgcctaaaaaaaatatatataagtgtGACAAGTGTTTATATGAGACATACCAAAAGAGGTACCTTAGCAATCACAAGGCGATCCATCGACCAGATAGATATAAATGTGAATTGTGTGCATACACGGCGAGGAAAAAGGAGTACCTTAAGCGGCATAAACTGATTCACAAAGATCCTTCAGAGATAAAGATGTTCAAATGTGCCATATGTTCAATTGAGGTGAagcaaaaaaggtctcttgtgagCCATATGTTGTCCCATAGAAGTTCTCCAAAAAATCATCTGTAA
Protein Sequence: MLGTNSKQTLLCHKTDMKVENFIEPENEELHFKGVLNHIKIEIEEDMMTEIKTEDKEIKLEVAELDIKTEENYIEDIKKAESINKHSLKIEETEISAIYESQESSADITANNGDKHVIQNITISSRNVKIEDRDDVTQEDLSGRTMHQCNKCLFTTGQRANLQQHMLLHRNPSKVTMSKCKVCTFETKYKSYLKFHMLVHKAPAEVTMYKCGICTYESKLKRVLKRHIETHNVPYKCGVCKYETKQKTTFDLHTLSHTDPSAVETYKCGVCSYETIQKRHYKDHMLVHKKPSELETYKCVLCKYETTIKRYLTQHLRSHNVPYKCEICKYETKQKTMFDLHMLSHTDPSAVDTYKCRVCSYETIHKKHFKDHILVHKNSSELKTYKCALCKYETTIRRYLTQHLQTHKDRSDFTMYKCEKCAYETRIKSYIKVHMMTHQNPSEVSMHKCDICSYETKYKNSLNAHKLNHKSPSEIEMFKCELCTYETRHRKYLKDHMLVHKGPLPKKNIYKCDKCLYETYQKRYLSNHKAIHRPDRYKCELCAYTARKKEYLKRHKLIHKDPSEIKMFKCAICSIEVKQKRSLVSHMLSHRSSPKNHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -