Basic Information

Insect: Stenurella melanura
Gene Symbol: -
Assembly: GCA_963583905.1
Location: OY757316.1:12389120-12391166[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.088 13 8.8 0.4 1 23 61 83 61 83 0.94

2 17 2 2.8e+02 4.5 3.9 3 23 89 109 88 109 0.97

3 17 9.9e-06 0.0014 21.2 2.0 1 23 122 144 122 144 0.98

4 17 1.5e-05 0.0021 20.6 0.9 1 23 150 172 150 172 0.97

5 17 2.7e-06 0.00038 23.0 1.6 1 23 178 201 178 201 0.97

6 17 0.64 91 6.0 2.1 3 23 209 230 207 230 0.96

7 17 0.042 6 9.8 5.7 2 23 238 259 238 259 0.97

8 17 2.1 2.9e+02 4.4 0.2 1 23 277 299 277 299 0.94

9 17 1.4 2.1e+02 4.9 4.7 1 23 316 338 316 338 0.98

10 17 0.69 99 5.9 6.8 2 23 344 365 343 365 0.95

11 17 0.023 3.3 10.6 0.2 3 23 400 421 398 421 0.93

12 17 0.034 4.8 10.1 1.8 1 21 429 449 429 452 0.83

13 17 0.013 1.8 11.4 0.2 2 23 459 480 458 480 0.94

14 17 0.55 78 6.2 2.4 1 19 499 517 499 519 0.83

15 17 3.4e-06 0.00048 22.6 1.0 2 23 543 564 542 564 0.97

16 17 0.0039 0.55 13.0 3.5 1 23 569 592 569 592 0.97

17 17 0.012 1.8 11.4 2.7 1 23 598 620 598 620 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.088	13	8.8	0.4	1	23	61	83	61	83	0.94
2	17	2	2.8e+02	4.5	3.9	3	23	89	109	88	109	0.97
3	17	9.9e-06	0.0014	21.2	2.0	1	23	122	144	122	144	0.98
4	17	1.5e-05	0.0021	20.6	0.9	1	23	150	172	150	172	0.97
5	17	2.7e-06	0.00038	23.0	1.6	1	23	178	201	178	201	0.97
6	17	0.64	91	6.0	2.1	3	23	209	230	207	230	0.96
7	17	0.042	6	9.8	5.7	2	23	238	259	238	259	0.97
8	17	2.1	2.9e+02	4.4	0.2	1	23	277	299	277	299	0.94
9	17	1.4	2.1e+02	4.9	4.7	1	23	316	338	316	338	0.98
10	17	0.69	99	5.9	6.8	2	23	344	365	343	365	0.95
11	17	0.023	3.3	10.6	0.2	3	23	400	421	398	421	0.93
12	17	0.034	4.8	10.1	1.8	1	21	429	449	429	452	0.83
13	17	0.013	1.8	11.4	0.2	2	23	459	480	458	480	0.94
14	17	0.55	78	6.2	2.4	1	19	499	517	499	519	0.83
15	17	3.4e-06	0.00048	22.6	1.0	2	23	543	564	542	564	0.97
16	17	0.0039	0.55	13.0	3.5	1	23	569	592	569	592	0.97
17	17	0.012	1.8	11.4	2.7	1	23	598	620	598	620	0.98

Sequence Information

Coding Sequence: atggAACAAGAAAAgataaaagatataaaaattaaACACGAAATAATAGACATAGTAGAAGAAGATCTACTAGAAGAAAACATTGTCAAACAAGAAAAAGACATTCCTGAATATGtaaatgtaaatacattttctaatgTAAAGGCTGAAGCTGAGACTCGTGAAGATGTCCAAGAAATTTTCCAGTGCAGTCAATGCcccaataaatataaaaagattGCTTATTTAACAATACATGAAGCTTTACATGATCCTCGAAGATTTTGTCCAATCTGTTATGAAGCGTTTACATGCAAAAAGAAACTCGGACATCACTTGAATCAACATATAAAGGATCAAATAAAAGAGGACAAAAAATCAGCGTTTAGTTGTCCCTACTGTGAAAAGAGTTTCGATACCAAGAAGAAATTTACTTTGCATGTGAGGGTGCACACAAATGAGAGACCACACAAGTGTGAAATTTGTGGAGAAGGCTTTAAGCAGTCGGGTACTCTAAAGGACCATTATGTCACGCATACCAAGGAAAAACGATTCGTCTGTGAGATTTGTAATGGTTCTTTTACTACATCTTCCAGCTTGAAGAGGCACAAGAGAAAAATGCACGATAAGGGAAAAACGATTAACTGCAAACATTGTGAGGCCAAGTTTTTAAATATGGCCGATTTTAGGACTCACAGGAATACTCTTCATCCTGATGTAGGTTATAAGAGAACTTGCCCTCTTTGCTTTGAAACCTTTCGTACTAGATGTACCTATAAAAAACATAAGCAATATCATGATGATCATGATGAGATACTACCAAAATACAAAGAAATGTTAACCAAGTGTTACCTCTGTGTGTTGTGCGGCGAGGAAATGTCGACGTTAAACTCGTATTTAGAACATAGACGTGACCATTTGAATTATACCAAAGCAGAATTGGAAGAGGCAAGAAATAACAATGTATATAAGTGTAAATCTTGTTCTCGGCAATTTCTAGCTAAGTGTACTCTATTTAAACACATGGATGTCCACATGGAGAAGAACTCGAAATGCAACTTCTGCCACAATTTTTATACACACTATGGTTTGAGGACTCATATGAGAACTTATCATCAAATGTTGCATTGCCGTGTTTGTCGCAAAGTCATATTAGGAAGGGCGAAGCTTTACTATCACTATCAGATGTCCCACCCTACAGTGAAGAAACCCCTCGCTTGCAACGTTTGTGGAAAGCAGTACATTGCAAGAAACCAACTGAATTTACACTTCAAGCTAATGCATGAAACAAATTCTATTAAAAACTTCAAGTGCAGCGTTTGCGGGAAGAGGTTCTTCACTAGATTCATCATGGCGTCACACATGGTACATATTCACAAAACAAAAATCGAAATTAAATGCTCCATCTGTCAAGTTGTATGTGCTACTAAAAAGGAATTGGCGGCTCATAATGCAATCCACAAAGAAAGTAGCATCGAAGCAGAGAAATTCTGTGGTGAAAAACCGCACAAACGTTTTCAATGTAAAACATGCAAGAAAATATTCCAGTCTAGTAAAGGCTGTAAAATGCATATTGCGTTCAAAACGTGCAGAAACTTCTTAGAGAAAAAAGAAAGCAAAGAGAGGACAGAAGCGGCTAACAACAGTAAATGCATGGTGTGCTCGAAGACGTTTGCTACTGTGGATAATCTACGGCGGCATATGAGACTGCATTCCGCTATTGATTTTTCCTGTAGACTTTGCCATAAGAAATATAAGACGATTGGAACAATGAGAAGACATATCCAGGTACAACATCCTGGGAAAAAAGTTTTCAAGTGTGATTCTTGTGAggaagaatttaataaattacatgAATATAGTAAACATATTAACAACCATAAATTGAAACTGGAATCTTCAGTGCAAATCAACAGCTATGCTGATAATGATTTAGATATCAAATATGCTGTTCCCAATGAATTCGATGTGATTAAACAAGAGTCAGAAGATCCTTTGGGGAGATTTTAA
Protein Sequence: MEQEKIKDIKIKHEIIDIVEEDLLEENIVKQEKDIPEYVNVNTFSNVKAEAETREDVQEIFQCSQCPNKYKKIAYLTIHEALHDPRRFCPICYEAFTCKKKLGHHLNQHIKDQIKEDKKSAFSCPYCEKSFDTKKKFTLHVRVHTNERPHKCEICGEGFKQSGTLKDHYVTHTKEKRFVCEICNGSFTTSSSLKRHKRKMHDKGKTINCKHCEAKFLNMADFRTHRNTLHPDVGYKRTCPLCFETFRTRCTYKKHKQYHDDHDEILPKYKEMLTKCYLCVLCGEEMSTLNSYLEHRRDHLNYTKAELEEARNNNVYKCKSCSRQFLAKCTLFKHMDVHMEKNSKCNFCHNFYTHYGLRTHMRTYHQMLHCRVCRKVILGRAKLYYHYQMSHPTVKKPLACNVCGKQYIARNQLNLHFKLMHETNSIKNFKCSVCGKRFFTRFIMASHMVHIHKTKIEIKCSICQVVCATKKELAAHNAIHKESSIEAEKFCGEKPHKRFQCKTCKKIFQSSKGCKMHIAFKTCRNFLEKKESKERTEAANNSKCMVCSKTFATVDNLRRHMRLHSAIDFSCRLCHKKYKTIGTMRRHIQVQHPGKKVFKCDSCEEEFNKLHEYSKHINNHKLKLESSVQINSYADNDLDIKYAVPNEFDVIKQESEDPLGRF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -