Smel064622.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757315.1:104083757-104085772[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0015 0.21 14.3 3.8 1 23 4 26 4 26 0.98 2 21 8.5 1.2e+03 2.5 2.2 1 23 59 81 59 81 0.95 3 21 0.0045 0.64 12.8 1.3 1 23 90 112 90 112 0.98 4 21 0.11 16 8.4 2.7 1 23 121 143 121 143 0.98 5 21 0.01 1.5 11.7 0.4 1 23 152 174 152 174 0.97 6 21 0.0012 0.17 14.6 1.0 2 23 184 205 183 205 0.97 7 21 0.0063 0.9 12.4 1.7 2 23 215 236 214 236 0.96 8 21 0.0041 0.58 13.0 1.9 1 23 245 267 245 267 0.97 9 21 0.0088 1.2 11.9 1.7 1 23 276 298 276 298 0.98 10 21 0.036 5.1 10.0 0.5 1 23 306 328 306 328 0.97 11 21 0.025 3.6 10.5 2.9 2 23 338 359 337 359 0.96 12 21 0.022 3.1 10.7 2.0 2 23 369 390 368 390 0.96 13 21 0.024 3.4 10.5 2.4 2 23 400 421 399 421 0.96 14 21 0.024 3.4 10.5 3.9 2 23 431 452 430 452 0.96 15 21 0.0046 0.65 12.8 1.0 2 23 462 483 461 483 0.96 16 21 0.0028 0.39 13.5 2.2 1 23 492 514 492 514 0.98 17 21 0.0098 1.4 11.8 2.2 1 23 523 545 523 545 0.97 18 21 0.0088 1.2 11.9 1.7 1 23 554 576 554 576 0.98 19 21 0.075 11 9.0 0.9 1 23 584 606 584 606 0.97 20 21 0.027 3.8 10.4 3.9 2 23 616 637 615 637 0.96 21 21 0.0098 1.4 11.8 2.7 2 23 647 668 646 668 0.96
Sequence Information
- Coding Sequence
- ATGACAATGTTTAAATGTGGGCTGTGTTCATACGAGTCAAAACATCCGAGTCATCTTAAGCAACATCAGCTTATCCACAGATCTTCAAATTTCCCAGAGCTTGTGTCACAAATGAAGAATAAAAATTGCGTTAATCAGTCTGGCATGGCTGATAGAATCACTAAAAGGATGATACATAAGTGCGAATCTTGTCCATATGAGACAAGATGGATGTTTAACCTTAATCAGCACAAACTGTCCCATAGAAGTACTTCAGATATAACACTATTTAAGTGCGACCTATGTCCATATGCAGGAAAACGAGAGAAGCATCTAAAAGACCATAAACTGGTCCATAAAAGTTCTTCAGATGTAACATTGTTTAAGTGCGAGCGGTGTCCATTTAAGACAAAATATCGACGTGTTCTTACACGACACAAATTGATCCATAAAAATTCTTCAGAAATAAGTACTTTTAAATGTGAACTGTGCCCATTTGAGACCAAACGTGGCTCTTATCTTAAACAACACGCACTGGTCCATAAAAGTACTTCAGAATTAACTATGCTCAAGTGCGAGTTTTGTCCTTATGAGGCAAAACGGCAGCAAAATCTTAAACGACACAAAATGGTCCATAAAAGTACTTCAGAGCTAACAATGCTTAAGTGCGACTTATGTTCATATGTGGGAAAACATAGGGAAAATCTTAGAAAACACGAATTGTCCCATAAAAGTACTTCAGAGAGAACACTGCATAAGTGCGACCTATGTCCATATGCAGGAAAACGTGCGGAGCATCTAAAAACCCATAAACTGGTCCATAAAAGTTCTTcagatgtaacaatgtttaagtgcgaATTGTGTTCATTTAAGACAAAATATCGAGGGGCTCTTACACGTCACAAATTgatccataaaaattctgaaataagaACTTTTAAATGTGAACTGTGCCCATTTGAGACCAAACAGGGCTATTATCTTAAACAACACGCATTGATCCATAAAAGTACTTCAGAATTAACTATGCTTAAGTGCGAGTTTTGTTCGTACGAGGCAAAACATCAGCAAAATCTTAAACGACACAAACTGATCCATAAAAGTACTTCAAAGTTAACAATGCTTAAGTGCAACCTATGTTCGTATGAGACAAGATATAAGGGTAGTTTTAAACGACACAAATTGATCCATAAAAGTACTTCAGAGTTAACAATGCTTAAATGCAACCTTTGTTCATATGAGACAAGATATAAGAGTAGTTTTAAACAACACAAATTGATCCATAAAAGTACTTCAGAGTTAACGATGCTTAGGTGCGAGTTTTGTTCGTACAAAGCAAAACATCAGCAAAATCTTAAACGACACAAAATGATCCATAAAAGTACTTCAGAGTTAACAATGGTTAAGTGTGACGTATGTTCGTACGAGACAAAATATCAGCAAAATCTTAACCGGCACAAAACGGTCCATAAAAGTTCTTCAGAGCtaacaatgtttaagtgcgaCTTATGTTCATATATGGGAAAACGTAGCGATTATCTTAGAAAACACAAATTGTCCCATAAAAGTACTTCAGAGAAAACACTGCATAAGTGCGACCTATGTCCATATGCAGGAAAACATGCGGAGTATCTAAAAAAGCATAAACTGGTCCATAAAAGTTCTTCAGATGTAACAGTGTTTAAGTGCGAATTGTGTTCATTTAAGACAAAATATCGAGGGGCTCTTACACGTCACAAATTgatccataaaaattctgaaataagaACTTTTAAATGTGACCTGTGCCCATTTGAGACCAAACAGGGCTATTATCTTAAACAACACTCATTGATCCATAAAAGTACTTCAGAATTAACTATGCTTAAGTGCGAGTTTTGTTCGTACAAGGCAAAACATCAGCAAAATCTTAAACGACACAAACTGATCCATAAAAGTACTTCAGAGTTAACAATGCTTAAGTGCAACCTATGTTCGTATGAGACAAGATATAAGAGTAGTTTTAAACGACACAAATTGATCCATAAAAGTACTTAA
- Protein Sequence
- MTMFKCGLCSYESKHPSHLKQHQLIHRSSNFPELVSQMKNKNCVNQSGMADRITKRMIHKCESCPYETRWMFNLNQHKLSHRSTSDITLFKCDLCPYAGKREKHLKDHKLVHKSSSDVTLFKCERCPFKTKYRRVLTRHKLIHKNSSEISTFKCELCPFETKRGSYLKQHALVHKSTSELTMLKCEFCPYEAKRQQNLKRHKMVHKSTSELTMLKCDLCSYVGKHRENLRKHELSHKSTSERTLHKCDLCPYAGKRAEHLKTHKLVHKSSSDVTMFKCELCSFKTKYRGALTRHKLIHKNSEIRTFKCELCPFETKQGYYLKQHALIHKSTSELTMLKCEFCSYEAKHQQNLKRHKLIHKSTSKLTMLKCNLCSYETRYKGSFKRHKLIHKSTSELTMLKCNLCSYETRYKSSFKQHKLIHKSTSELTMLRCEFCSYKAKHQQNLKRHKMIHKSTSELTMVKCDVCSYETKYQQNLNRHKTVHKSSSELTMFKCDLCSYMGKRSDYLRKHKLSHKSTSEKTLHKCDLCPYAGKHAEYLKKHKLVHKSSSDVTVFKCELCSFKTKYRGALTRHKLIHKNSEIRTFKCDLCPFETKQGYYLKQHSLIHKSTSELTMLKCEFCSYKAKHQQNLKRHKLIHKSTSELTMLKCNLCSYETRYKSSFKRHKLIHKST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -