Smel064618.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757315.1:104006749-104031151[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.23 33 7.4 5.7 1 23 33 55 33 55 0.99 2 35 0.03 4.3 10.2 5.8 1 23 64 86 64 86 0.97 3 35 0.037 5.3 9.9 3.2 1 23 121 143 121 143 0.97 4 35 0.0021 0.3 13.8 4.3 1 23 152 174 152 174 0.99 5 35 0.059 8.4 9.3 5.3 1 23 183 205 183 205 0.98 6 35 0.0027 0.38 13.5 0.4 1 23 269 291 269 291 0.98 7 35 0.023 3.2 10.6 1.7 1 23 300 322 300 322 0.98 8 35 0.064 9.2 9.2 0.6 1 23 330 352 330 352 0.97 9 35 0.065 9.2 9.2 2.9 2 23 362 383 361 383 0.96 10 35 0.026 3.7 10.4 3.1 1 23 392 414 392 414 0.98 11 35 0.061 8.7 9.3 2.4 2 23 424 445 423 445 0.96 12 35 0.056 8 9.4 1.9 2 23 455 476 454 476 0.96 13 35 0.061 8.6 9.3 3.9 2 23 486 507 485 507 0.96 14 35 0.0025 0.35 13.6 2.7 2 23 517 538 516 538 0.97 15 35 0.015 2.2 11.1 3.1 1 23 547 569 547 569 0.97 16 35 0.0069 0.98 12.2 1.0 1 23 578 600 578 600 0.97 17 35 0.0048 0.67 12.7 5.9 1 23 912 934 912 934 0.97 18 35 0.021 3 10.7 5.8 1 23 943 965 943 965 0.99 19 35 0.3 43 7.1 3.2 1 23 974 996 974 996 0.97 20 35 0.00055 0.078 15.7 5.5 1 23 1005 1027 1005 1027 0.98 21 35 0.3 43 7.1 3.2 1 23 1067 1089 1067 1089 0.97 22 35 0.014 2 11.2 3.6 1 23 1097 1119 1097 1119 0.96 23 35 0.0048 0.68 12.7 2.8 1 23 1128 1150 1128 1150 0.97 24 35 0.29 41 7.1 3.1 1 23 1159 1181 1159 1181 0.97 25 35 0.012 1.7 11.5 2.4 1 23 1190 1212 1190 1212 0.98 26 35 0.87 1.2e+02 5.6 2.2 1 23 1221 1243 1221 1243 0.98 27 35 0.013 1.9 11.3 0.3 2 23 1253 1274 1252 1274 0.97 28 35 0.05 7 9.5 4.4 1 23 1307 1329 1307 1329 0.97 29 35 0.0043 0.61 12.9 1.4 1 23 1338 1360 1338 1360 0.98 30 35 0.041 5.8 9.8 0.5 1 23 1369 1391 1369 1391 0.98 31 35 0.073 10 9.0 1.7 1 23 1400 1422 1400 1422 0.97 32 35 0.02 2.8 10.8 3.7 2 23 1432 1453 1431 1453 0.96 33 35 0.44 62 6.6 0.3 2 23 1463 1483 1462 1483 0.95 34 35 0.83 1.2e+02 5.7 0.1 2 23 1493 1513 1492 1513 0.94 35 35 2.5 3.6e+02 4.2 1.0 2 23 1523 1543 1522 1543 0.91
Sequence Information
- Coding Sequence
- ATGCTTAAGTGTGAACTATGTTCATATGAGACAAAATGTAAAGATCATCTTAAACTACATAAATTAAGACATGAAAGAACTTCAAAAGTAACAGAGTTTAAATGTGAACTATGTCTGTATGAAACGAAACGTCGGTGTCTTTTTAAACGACACCAGTTGACCCATAGAAATCCTTCAAAGATGACAATGTTTAAATGTGTACTGTGTTCATACAAGTCAAAACATCAGAGTCATCTTAAGCAACATCAGCTTGCTCACAGATATTCGAATTTCTCAGAGCTTAAATCACAAATAAAGATTGTGATTGTGAATTGTGTTAATCAGCCTAGTATGGCTGATAAAGCTTCTGAAAGGATGTCACATAAGTGTGAAACTTGTCCATATGAGACAACAGGTGAAGATCATCTTAAACGACACAATTTAACACATGAAAGAACTTCAAAAGTTACAGTGTTTAAATGTCAACTGTGTCCATATGAAACGAGACGTCAGTGTCTACTTAAACGACACCAGTTGACACATAGAAGTCCTTCAAAAATGACAATGTTTAAATGTGGGCTGTGTTCATACGAGTCAAAACATCGGAATCATCTTAAGCAACATCAGCTTATCCACAGATCTTCAAATTTCCCAGAGCTTATGTCACAAATGAAGAATAAAAATTGCGTTAATCAGTCTGGCATGGCTGGTAGAACCACTAAAAGGATGATACATAAGTGCGAAACTTGTCCATATGAGACAAGATGGATGTTTAAACTTAATCAGCACAAACTGTCCCATAGAAATACTTCAGATATAACACTATTTAAGTGCGACCTATGTCCATATGCAGGAAAACGTGCGGAGTATCTAAAAAAACATAAACTGGTCCATAAAAGTTCTTcagatgtaacaatgtttaagtgcgaACTGTGTTCATTTAAGACAAAATATCGAGGGGCTCTTACACGTCACAAATTgatccataaaaattctgaaataagaACTTTTAAATGTGAACTGTGCCCATTTGAGACCAAACGGGGCTATTATCTTAAACAACACGCATTGATCCATAAAAGTACTTCAGAATTAACTATGCTTAAGTGCGAGTTTTGTTCGTACGAGGCAAAACATCAGCAAAATCTTAAACGACACAAACTGATCCATAAAAGTACTTCAGagttaacaatgtttaagtgcaACCTATGTTCGTATGAGACAAGATATAAGGGTAGTTTTAAACGACACAAATTGATCCATAAAAGTACTTCAGAGTTAACAATGCTTAAGTGCAACCTATGTTCGTATGAGACAAGATATAAGAGTAGTTTTAAACAACACAAATTGATCCATAAAAGTACTTCAGAGTTAACAATGCTTAAATGCAACCTATGTTCATATGAGACAAGATATAAGGGTAGTTTTAGACGACACAAATTGATCCATAAAAGTACTTCAGAGTTAACGATGCTTAGGTGCGAGTTTTGTTCGTACAAAGCAAAACATCAGCAAAATCTTAAACGACACAAAATGATCCATAAAAGTACTTCAGAGTTAACAATGGTTAAGTGCGACATATGTTCGTACGAGACAAAACATCAGCAAAATCTTAAACGACACAAAATGGTCCATAAAAGTACTTCAGAGCTAACAATGCATAAGTGCGACTTATGTTCATATGTGGGAAAACGTAGGGATTATCTTACAAGACACAAATTGTCCCATGAAAGTACTTCAGAGAAAACACTGCATAAGTGCGACCTATGTCCATATGCAGGAAAACGTGCGGAGTATCTAAAAAAACATAAACTGGTCCATAAAAGTTCTTcagatAATGTTAATATATGTAAGGAAGCTGTGAAATGCATTGATTGTAGCAATAATCTTGAAGTGTACCTTAAGTTCAAATCCGCCTGTGATTATATGAGGAAGCAGTCATTAACAACTGATCTTATAGATGATATCAGTTTGGATCCAGAAATGATAGACATGACGAACAATTCAGTATCATTTATTGAATCCAAAAATGAAGTAATATGCTGTTTTTGTACAAAAACTAGTAAAAGAGAATGCCTTACATCACTAATTGAATCAAAGGAACATACGTTTTTGGTAGACATGCTGAAGAGACATATTCCgaaattgAATTTAAATATTATGGAAGAATTTTTAACATGTGAAATCTGTCTTGGTGGGCTACAAGTTGTTTCAAGTTTTTTAATGAAGTGTTTAGACGTGGaagataaaataagtaaatatagcGAAATAGAAGGAACGGACGATAAAGGCCAGATAGAATTAAAGGACGTGCAGCTCTTTGTATTTAAACCGACAGTAAAGTTTAAAAGGGAATCCAGTGGTGTGAATGAATTAAGAGAAAGACGTGATCAGTTTCAAGAGGGATGTCCCGTGCGACCTGAAGCTGACATAAAATGTGAAAAGGAAATAGAGAATGCAGAGTTATTTATTAAAGCCGAAGATATTGATATTAAATCAGAACACAGCGATTGTGATAGttttcaggAACCTCCTACCATAATTGAAACTGATAGTGGCTATTTGGATACTTCAGTGCTGAAGTCAGAAGAAAGACGTGAAGAACGAGTTGATCTGCATAAAAGTCCTTTGGAGTTAACATTGCTTAAGTGTGAACTCGGTCCAGATGAGACAAAACGTAAAGATTACCTTAAACAACACAAGTTAACTCAGCTTAAGTCACAAATAAAGAATAAATCTTCGAAAGAGATGGCGCATAAATGTGAAACTTGTCCATATGAGACAAAACGCAAAGATCATCTTAAACGACACAATTTAACACATGAAGGAATTTCAAAAGTAACAGTGTTTAAATGTCAACTGTGTCAATATGAATCGAAACGTCGATGTCTACTTAAACGACACCAGTTGACTCATACAAGTCCTTCAAAGATGGCTATGTTTAAATGTGAACTGTGTTCACATGTAGCAAAGAGTGTGGATCACCTAAAACAACACAAATTACTCCATAAAAGTTCTTcagatgtaacaatgtttaagtgtgaactATGTCCATATAAGACCAGACGTAAAGATCATCTTAAAAGACACAAGTCAACCCATGAAAGAACTTCaaaagtaataatatttaaatgtcaacTGTGTTCATATGAAACGAAATGTCGGTCTCTATTTAAACGACACAAGTTGACCCATAGAAGTCCTTCAAAGATGGCTATGTTTAAATGTGAACTGTGTTCACATGTAGCAAAGAGTGTGGATCATCTAAAACAACACAAACTACTTCATAAAAGTTCTTCAGATGTAACATTTAAGTGTGAGCTATGTCTATATGAGACAAAACGTAAAGATCATCTTAAACGACACAAGTTAGCCCATAAAAGTActtcaaaaagaaaaatgtttaaatgtgaactGTGTCCATATGGAACAAAACATCGATCCCTACTTAAACGACACAATTTGTCCCATAGAAGCCCTTCAAAGATGGTAATATTTAAATGTGAACTGTGTTCACATGTATCAGAAAATGTGGATCATCTAAAACAACACAAACTACTTCATAAAAGTTCTTcagatgtaacaatgtttaagtgtaaACTATGTCCGTATAAGTCAAAACGTAAGGATACTGTTAAACAACACGAGTTAACCCATAAAAGTACTTCAAAAAtaacaatgtttaaatgtgaattgTGTCTATATGAAACAAAACGTCAGTATATACTTAAACAACACAAATTGACTCATGGTAGTACTTCAAAGATGACAATGTTGAAATGTGAACTGTGTTCATATGAGTCAAAATATCCGGATGATCTTAAAGAACATCAGCTTTCTCACAAATCTTCGAATCATTCAGAGCCTAAGTCACAAACAAGGAATGTAGATTGTGTTTATCAGCCTGACATGGCCAATAAAACTTCTAAAGGGATGATGCATAAGTGCGACACTTGTCCATATGTGACAAAATTTTCGAACAAACTTAAACGTCACAAATTGTCCCATAAAAGTACCTCAGAGATAAAACTGTTTAAGTGCGACCTATGTTCATATGCAGGAAAACGTGCGGACCATCTAAAAAACCATAAACTGGTCCATAGAAGTTCTTcagatgtaacaatgtttaagtgtgaactGTGTTCATTTGAGACAAAACGTCCGGATGGTCTTAAAGGCCACAAGTTGATGCATAAAAGTCCCTCAGAAATAAGAACTTTTAAATGTGAACTGTGCCCATTTGAGACCAAACATGGCTATTATCTTAAACGGCACGCCTTGATCCATAAAAGTACTACAGAGTTAACTATGCTTACGTGCGAGTTTTGTTCGTATGAGACAAAACATCAGCAAAATCTTAAACGACACAAAATGGTCCATAAAAGTACTTCAGAGTTAACAATGCTTAAGTGCGACTTATGTTCGTATGTCGGACAACAGAAGAATCTTATACGACACAAAATAGTCCATAAAAGTATTTCAGAGTTAACAATGCTTAAGTGCGACTTATGTCCATATGTCGGAGTACAGAAAAATCTTAAACGACATGAAATAGTCCATAAAAGTATTTCAGAGTTAACAATACTTAAGTGCGACTTATGTTCGTATGTCGGCATACAGCAAAATCTTAAACGGCACAAAAGGAACCATAGAAGTACCTAA
- Protein Sequence
- MLKCELCSYETKCKDHLKLHKLRHERTSKVTEFKCELCLYETKRRCLFKRHQLTHRNPSKMTMFKCVLCSYKSKHQSHLKQHQLAHRYSNFSELKSQIKIVIVNCVNQPSMADKASERMSHKCETCPYETTGEDHLKRHNLTHERTSKVTVFKCQLCPYETRRQCLLKRHQLTHRSPSKMTMFKCGLCSYESKHRNHLKQHQLIHRSSNFPELMSQMKNKNCVNQSGMAGRTTKRMIHKCETCPYETRWMFKLNQHKLSHRNTSDITLFKCDLCPYAGKRAEYLKKHKLVHKSSSDVTMFKCELCSFKTKYRGALTRHKLIHKNSEIRTFKCELCPFETKRGYYLKQHALIHKSTSELTMLKCEFCSYEAKHQQNLKRHKLIHKSTSELTMFKCNLCSYETRYKGSFKRHKLIHKSTSELTMLKCNLCSYETRYKSSFKQHKLIHKSTSELTMLKCNLCSYETRYKGSFRRHKLIHKSTSELTMLRCEFCSYKAKHQQNLKRHKMIHKSTSELTMVKCDICSYETKHQQNLKRHKMVHKSTSELTMHKCDLCSYVGKRRDYLTRHKLSHESTSEKTLHKCDLCPYAGKRAEYLKKHKLVHKSSSDNVNICKEAVKCIDCSNNLEVYLKFKSACDYMRKQSLTTDLIDDISLDPEMIDMTNNSVSFIESKNEVICCFCTKTSKRECLTSLIESKEHTFLVDMLKRHIPKLNLNIMEEFLTCEICLGGLQVVSSFLMKCLDVEDKISKYSEIEGTDDKGQIELKDVQLFVFKPTVKFKRESSGVNELRERRDQFQEGCPVRPEADIKCEKEIENAELFIKAEDIDIKSEHSDCDSFQEPPTIIETDSGYLDTSVLKSEERREERVDLHKSPLELTLLKCELGPDETKRKDYLKQHKLTQLKSQIKNKSSKEMAHKCETCPYETKRKDHLKRHNLTHEGISKVTVFKCQLCQYESKRRCLLKRHQLTHTSPSKMAMFKCELCSHVAKSVDHLKQHKLLHKSSSDVTMFKCELCPYKTRRKDHLKRHKSTHERTSKVIIFKCQLCSYETKCRSLFKRHKLTHRSPSKMAMFKCELCSHVAKSVDHLKQHKLLHKSSSDVTFKCELCLYETKRKDHLKRHKLAHKSTSKRKMFKCELCPYGTKHRSLLKRHNLSHRSPSKMVIFKCELCSHVSENVDHLKQHKLLHKSSSDVTMFKCKLCPYKSKRKDTVKQHELTHKSTSKITMFKCELCLYETKRQYILKQHKLTHGSTSKMTMLKCELCSYESKYPDDLKEHQLSHKSSNHSEPKSQTRNVDCVYQPDMANKTSKGMMHKCDTCPYVTKFSNKLKRHKLSHKSTSEIKLFKCDLCSYAGKRADHLKNHKLVHRSSSDVTMFKCELCSFETKRPDGLKGHKLMHKSPSEIRTFKCELCPFETKHGYYLKRHALIHKSTTELTMLTCEFCSYETKHQQNLKRHKMVHKSTSELTMLKCDLCSYVGQQKNLIRHKIVHKSISELTMLKCDLCPYVGVQKNLKRHEIVHKSISELTILKCDLCSYVGIQQNLKRHKRNHRST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -