Basic Information

Insect: Stenurella melanura
Gene Symbol: -
Assembly: GCA_963583905.1
Location: OY757309.1:193873516-193885137[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.77 1.1e+02 5.8 0.0 2 23 53 74 52 74 0.91

2 16 3.1 4.4e+02 3.9 5.0 1 23 80 102 80 102 0.98

3 16 0.058 8.2 9.3 1.1 1 11 108 118 108 130 0.82

4 16 0.00053 0.075 15.7 3.0 1 23 136 159 136 159 0.97

5 16 0.00047 0.066 15.9 1.8 1 23 171 194 171 195 0.96

6 16 0.082 12 8.9 1.0 3 23 205 225 203 225 0.96

7 16 3.6e-05 0.005 19.4 0.4 1 23 231 253 231 253 0.98

8 16 0.0059 0.83 12.5 1.8 1 16 259 274 259 276 0.87

9 16 0.00047 0.066 15.9 1.0 1 23 368 390 368 390 0.98

10 16 0.00087 0.12 15.1 0.5 1 23 396 418 396 418 0.95

11 16 0.00012 0.017 17.8 2.6 1 23 424 447 424 447 0.98

12 16 0.0044 0.62 12.9 1.2 1 23 459 482 459 482 0.94

13 16 0.082 12 8.9 3.1 3 23 491 511 490 511 0.98

14 16 0.019 2.7 10.8 4.6 1 23 517 539 517 539 0.98

15 16 1.4e-05 0.002 20.7 0.3 1 23 545 567 545 567 0.99

16 16 0.032 4.6 10.1 0.1 1 20 573 592 573 594 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.77	1.1e+02	5.8	0.0	2	23	53	74	52	74	0.91
2	16	3.1	4.4e+02	3.9	5.0	1	23	80	102	80	102	0.98
3	16	0.058	8.2	9.3	1.1	1	11	108	118	108	130	0.82
4	16	0.00053	0.075	15.7	3.0	1	23	136	159	136	159	0.97
5	16	0.00047	0.066	15.9	1.8	1	23	171	194	171	195	0.96
6	16	0.082	12	8.9	1.0	3	23	205	225	203	225	0.96
7	16	3.6e-05	0.005	19.4	0.4	1	23	231	253	231	253	0.98
8	16	0.0059	0.83	12.5	1.8	1	16	259	274	259	276	0.87
9	16	0.00047	0.066	15.9	1.0	1	23	368	390	368	390	0.98
10	16	0.00087	0.12	15.1	0.5	1	23	396	418	396	418	0.95
11	16	0.00012	0.017	17.8	2.6	1	23	424	447	424	447	0.98
12	16	0.0044	0.62	12.9	1.2	1	23	459	482	459	482	0.94
13	16	0.082	12	8.9	3.1	3	23	491	511	490	511	0.98
14	16	0.019	2.7	10.8	4.6	1	23	517	539	517	539	0.98
15	16	1.4e-05	0.002	20.7	0.3	1	23	545	567	545	567	0.99
16	16	0.032	4.6	10.1	0.1	1	20	573	592	573	594	0.94

Sequence Information

Coding Sequence: ATGTATACCACTGAGGAAGGAACAAGGAATTCTAGATTAAGTAAAGGAAAACGTCGAGGTTgttataaaaagaataaagtaccAGAACAGCTAAAATCAAGACAGAAAATTGAAAAACCCGTTATCTTACAACCTCTGAAACTAGAGGAACCCATTAAGTGCGGTGTTTGCAGTGAAATTTTCGACACGAACATTGGTTATGCCACACATTCCATAGAGCACAACGTAGATAAGAGATACTCCTGTCATTTGTGCCATTACAAAAACACGTCCAAATATCGGATAGAGGCTCACGTACGAATGCATGAGGGCTCCGCCAAATACAAATGCGAGATGTGTGGGAAAGCTTTTAGGATAGGCACTCATGCCGTTGAGcataaatattttcattctgGAGAAAGACCATTCCAATGCGAAATTTGCGGGAAACACTTCATGTACTCTAGACGTCTGGCTTCTCATCGTCGTAACTCTCATTACCAACTCTTGACTGGTAAACCTAAGATAAAATATGAATGTGAGCTATGCGATAAAAAATTTGAATCCTTACCGGGtctaaataatcataaaaataagaAGCATCATAATATCCAAACCGACATGTCGGTCatatgtgaaatatgtggtaAGAAAATTTCGTGTAAAGGTAGACTGAAATACCATCTCAGAATTCATAGCGGCGACAAACCGTTTTCTTGTATGGTATGTACTAAAAAATTTGCCATGAAAGATCTATTAATAGAGCATATGAGGGTACATACAGGGGAAAAACCGTATACTTGTAAATATTGTGGTAAAACTTTTGGACATAGGTCACCGTTTAGGCAAGCAAAAGAGGCCACAAAAAAGATAAGAAAAAAACGTGCGAAAATCAAAGGAAAATCCCGCGGTCCTCGTATTAAACAGAATACTTCAGAAAAACGGGTTCCTcgcaataaaaagaataattcagAAAAATCCCGGAGAGCTGCAAAATCCAAAAACCTTATTGCGGAACCTATAGAACTAGAAGAACCAATTGAATGTGAATTTTGTTCTGAATCACACAAAACTAATCTCTCGTATGCTTTGCATTCCATTAATCATAGTAAAGAAGGTGGATATTCATGCCATTTGTGTAATTATGAGTCAAAATCAAAGTATGCGTTGGAAGCACATGTAAGAGCTCATGAAGGCTCCGCAAGATTCAAGTGCGAAATTTGTGGTAAAACATTTAAAGCCGGAACGCAAGCTCAACAACATAAAAATGTCCATACAGGAGAAACGCCTTTTCAATGTGAGGTGTGCGGGAAGCACTTCATGTACTCCAGGCTCTTGAGTTCCCACCGACGCATATCGCATTACCCTAAAATCTCTGGCAACCCCCCTATAAAATATGAGTGTACTATCTGCAATATTTCTTACAAGTTTGGGTCGAGTTTAAGTAGACACAACCAAAACAAGCACAAGAAAGTGGACAAATCGGTTCTTTGCGATATTTGCGGGAAAAGGCTCTCTTGCCGAGATAAACTGAAATATCATCTCAGGAATCACACTGGTATAGACACTTTTCCTTGTCTCATATGTCAAAAGAAATGTTCGAAAAAGGAGCAACTGGTCTGTCATATGCGCATACATACCGGTGAAAAACCATATGTTTGCAAATATTGTGGAAAAGGGTTTGCGCAGAATGCTCCTTACATGTACCATATAAAAACTCACACAGGTGTTAAGCCGCATGTGTGTCCGTTCTGTGAAACCGGTTTTATCGCCAAAAGTGCTTGGAGAAATCACATGACTAATTGTAAAAAAAGGGTGGTCGTCAAAAGTGAAGATGAAGATACCTTAGGTTGA
Protein Sequence: MYTTEEGTRNSRLSKGKRRGCYKKNKVPEQLKSRQKIEKPVILQPLKLEEPIKCGVCSEIFDTNIGYATHSIEHNVDKRYSCHLCHYKNTSKYRIEAHVRMHEGSAKYKCEMCGKAFRIGTHAVEHKYFHSGERPFQCEICGKHFMYSRRLASHRRNSHYQLLTGKPKIKYECELCDKKFESLPGLNNHKNKKHHNIQTDMSVICEICGKKISCKGRLKYHLRIHSGDKPFSCMVCTKKFAMKDLLIEHMRVHTGEKPYTCKYCGKTFGHRSPFRQAKEATKKIRKKRAKIKGKSRGPRIKQNTSEKRVPRNKKNNSEKSRRAAKSKNLIAEPIELEEPIECEFCSESHKTNLSYALHSINHSKEGGYSCHLCNYESKSKYALEAHVRAHEGSARFKCEICGKTFKAGTQAQQHKNVHTGETPFQCEVCGKHFMYSRLLSSHRRISHYPKISGNPPIKYECTICNISYKFGSSLSRHNQNKHKKVDKSVLCDICGKRLSCRDKLKYHLRNHTGIDTFPCLICQKKCSKKEQLVCHMRIHTGEKPYVCKYCGKGFAQNAPYMYHIKTHTGVKPHVCPFCETGFIAKSAWRNHMTNCKKRVVVKSEDEDTLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -