Smel064767.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenurella melanura
Gene Symbol
-
Assembly
GCA_963583905.1
Location
OY757315.1:105622215-105656557[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0002 0.029 17.1 0.3 1 23 276 298 276 298 0.98
2 25 0.31 44 7.0 3.0 1 23 307 329 307 329 0.97
3 25 0.042 6 9.8 0.8 1 23 338 360 338 360 0.99
4 25 7.1 1e+03 2.7 0.5 1 23 367 389 367 389 0.93
5 25 0.08 11 8.9 1.4 1 23 398 420 398 420 0.98
6 25 0.0063 0.89 12.4 1.2 1 23 429 451 429 451 0.99
7 25 0.062 8.8 9.2 1.7 1 23 460 482 460 482 0.98
8 25 0.84 1.2e+02 5.7 1.6 1 23 488 510 488 510 0.97
9 25 0.00022 0.031 17.0 4.1 1 23 519 541 519 541 0.98
10 25 0.00056 0.08 15.7 0.9 2 23 551 572 550 572 0.97
11 25 0.00012 0.017 17.8 2.6 2 23 582 603 581 603 0.97
12 25 0.5 71 6.4 4.7 2 23 613 634 612 634 0.97
13 25 0.0049 0.7 12.7 1.3 1 22 640 661 640 661 0.97
14 25 0.01 1.5 11.7 2.0 1 23 1285 1307 1285 1307 0.98
15 25 0.0036 0.51 13.1 1.3 1 23 1316 1338 1316 1338 0.97
16 25 0.00039 0.055 16.2 2.2 1 23 1347 1369 1347 1369 0.97
17 25 0.058 8.2 9.3 3.1 1 23 1378 1400 1378 1400 0.97
18 25 0.0063 0.89 12.4 2.2 1 23 1409 1431 1409 1431 0.98
19 25 0.00033 0.047 16.4 0.7 1 23 1440 1462 1440 1462 0.98
20 25 0.016 2.2 11.1 2.7 1 23 1471 1493 1471 1493 0.98
21 25 0.33 47 7.0 2.6 1 23 1502 1524 1502 1524 0.97
22 25 0.034 4.8 10.1 2.5 1 23 1533 1555 1533 1555 0.98
23 25 0.00019 0.027 17.1 1.9 1 23 1564 1586 1564 1586 0.98
24 25 0.16 23 7.9 3.6 1 23 1595 1618 1595 1618 0.97
25 25 4.7 6.7e+02 3.3 4.9 1 23 1627 1649 1627 1649 0.96

Sequence Information

Coding Sequence
ATGAGGGCGTTGTCTTTAGCTGACTTGAAGAATGATGTTAGTTTGGATtcagtaaatattgaaaatacaaataatCTAAAGTCAGTTATGGAACTCCCAGATGAAAGAAAATGTAGTTTTTGTACAAAAACAGCTGAAAGAATTCTTGTATCATTACTAGAATCAAAGGAAAATATGTTCTTGGTAGACATGTTAGAGAAACATGTTCCAGAATtgaaTTTAAGTACTGTTGAAGAACTTTCAACTTGTGAAACCTGTTTTGACAGAATGCAAAGCGTTTCCAAATTTTTAACAAAGTTTTCGGATGTTGAAGAGAAAGTaagtaaatatattgaaatagaGGGAACGGATGATAAAGGACAAATAGAATTGCAGCATGTGCAACAATTTATATCCAAACCCATCTTAAAGTTTGAGAGTGAATCCTGCCAAATAAATGAATTAGGACAAACATATGATTGCGCTCAAGAATTTCCCATTAAAGCTGAAGATGAAATAACATGTGAAACAGAGGGGGACAACTTAGAAGCATTTATTAAAACAGAATATGCTGATGTTAACACCGAACAAGACAATTGTGATAGATTTCAAGAACCGTCTGCCGAATTTACATTAGACAATGAACACCAGGATCCTTTGAACATAACTGTGGATAAGTTTGATGCTTATACATATGAGACAACTCGTATGAATCACCACATTAGCCATAAGAATCGTCCACCGAGAACAACCTTCAAATGTGAAATGTGTGCATATAGGTCAACATTCTTGCATTGTTTTACACGGCACAAATTAACACATAAGAATTCCTCggagataaaaaaatttaaatgtgaagtGTGTCCATATGAGGCAAAACGTAAAGACTCTCTCAACACACACATGTTGATCCACAAAGGTCCCTCAGAGGTGATAATGTATAAGTGTGACACTTGCCCGTATGAGACAAAACGCAAGTGCCGGCTTAACGAACACAGCTTGATTCATAAATGCCCCTCGGAGACAAAAATGTTCAAGTGTGACTTGTGCGCCTTCGAAGCAAAACGTAAACGTGCTGTTAAGAGACATATGTTGACACATACAAATCCTCCAAAACTATATAAGTGTGAAATATGTGCTTATGAAACAAACTTTAAGCTTTATATTGTCCGACACAAACTCATCCACAATAATCCCTCGGAAGTTATAATGTACAAGTGCAACACTTGTGCCTACATGACCAAAAGTAAGTCCCGTCTAAGCGAACACGGATTGACCCATAAAGCTCCCACAGAGATAACGATGTTCAAGTGTGAAATATGCACTTTTGAGGCGAAACGTAAACGAGGTGTTAAGAGACACATGTTGACGCACAAAAACCACTCTGAGATGGCAATATTCAAATGCAAGATGTGCCCATTTGAGACGATATATGAATACAATTACAAGATGCACTTGTTGAGGCACAAAGAATTTTCACGGTATAAGTGTGAGATTTGTACCTTTTGGACAAATCATAAAGGTAGCCTTAACGAGCATAAATTGATACATAATAGTTCTTCAGAAATAACGATGTTCAAATGTGACATGTGTACCTACAAGGTTAAACGTAAGCATGACCTTAAGAGGCATATGTTGATACATAAAGATCCCTCCGAGGTGGCAAAGGTTAAATGTGAAATATGTGGGTATGAAACAATACATAAGAATAGTCTTAGGAGGCACATCTTGAACCACAAACGTGTACCTAAGGTAACGATCCTCAAATGTGAAATGTGTAACTACGTGGCAAAACGTAAACATGATCTCAAGAGGCATATGTTGACACATAAAGATCCCTCGGAGGTGTCAAAGGTTAAATGTGAAATGTGTACATTTGAAACGATACACAACAATTGTCTTAAGAGGCACATTTTGAAACACAAACGTGTACCAACATATAAGTGTGATATGTGCAAATTTAAGACAAAAATTAATGGTAATCTTAGGAAGCACATGaaTACGGATATATTTAAGTACACAGTGACATGCATTGAATGTGCCAATAACCTCCAAGGATTCCTTAATTTAAAATCTGCCTGTGTTGGCATAAGGAAGAGAGCATCGCTTGTAGCAAATCCAGGAAACGATGTCAGCTTGGATCCTGTGAATactcaaaatagaaaaaatctAAAACCGGTAACAGAGCTCAAAGATGATATAGGATGTAGTTTCTGTACCAAGCCAACCGGAGAAGAAAACTTTGTAGCATTAAACGAATCAAAGGAAAACATGTTCTTGGTGGATATTTTAGAGAAATATATTCCAGAACTGAATGTTAGTAATAATGGACAACTTTTATCTTGCAAAACCTGTCTTGATGGAATGCAAAGAGTATCATGCTTTTTAACAAACTGTTTGTATGTGGAAGacaaaataactaaatatattgaaatagaaGGAACGGATGATAGAGGACAGGTAGAATTACAGAATCTACAACAATTTGTATTTAAACCAACAATAAAATTTGAGAGACAATCCTGCCACGTAAATGCAACAATCCAGGCACATGATAGTATTCGAGAAGAATTTGCCACAAAGGCTAAAAGTGAAataacatatgaaataaaaactgATAACCTGGACTCgtttgttaataatgaaaatgcTGGTATTAAATCTGATGTTGATACTAAATCAGAGGGTCGTATTATTAAATCAGATGTCGATTTTGAATCAAAAAATGATATTAAATCTGAAGTTGTTGATATTAAATGTGACGATAGTATCAAGTCAAAGGACATTGATATTAAATCAGAGGATGTTGATATTAAATTAGATGTCGATGATGTTTTTGTGGAATCAAAATATGGTATTAATTCAGaagatatgaatattaaatctGAGGATACTGTTAAATTACAAGACGATATCAAATCACAGGAAGTTGATATCAAATCAGAAGAAATTGATATGAAATCAGAAGAAAGTGATCACGATAGGCAATCCTCCCACATAAATGCAACAATCCAGGCACATGATAGTATTCGAGAAGAATTTGCCACAAAGGCTAAAAGTGAAataacatatgaaataaaaacagATAACCTGGACTCGTTTGTTAAAAATGAAAATGCTGATATTAAATCTGATGTTGGTACTAAATCAGAGGGTGATGTTATTAAATCAGATGTCGATTTTgaatcaaaaaattatattaaatctgaAGTTGTTGATATTAAATGTGACGATAGTATTAAGTCAAAGGACATTCACATTAAATCAGAGGATGTTGATATTAAATTAGATGTCGATGATGTTTTTGTGGAATCAGAATATGGTATTAATTCAgaagatattaatattaaatctgaggATACTATTAAATTACAAGACGATATCAAATCACAGGAAGTTGATATCAAATCAGAAGAAATTGATATGAAATCGGAAGAAAGTGATCACGATAGAGGGGAAACTAATAAGGAGTTAGAAGATGAAATTTCAATGTCaattgatattttaaatgacTGGTATGCCGCAAACAATCTTAAACTTAATATAAACAAGACTTACCTGTTAAAGTTTAGTCTCAGAAAGGAGCCTCCATTAGTCGTGAATTACAATGAACAACAACTGACTTCAACCGactatacaaaatttttaggaattgtCATTGATGCACAGTTAAGTTGGAAGTGTCATATAGAGCATCTTGCCAAAAGAATTAGTGGCTTTACGTATGCATTACGAACCATATCAAGATCTGTAAGTGAGGATGCAGCCATGGCCTCTTATTATGCATACGTCAACTCCAGAATGAGttttaaagaACCATCAGTCAAAATCAACTTGGATTATGATCACAAGAAGTCTTTAGTAAAAACAATGTATAACTGTGATATGTGCACGTATGAGACAACACATAGGGATCTTCTCAACGATCACTTATCAACCCATAAAAGTCATagaggaataaaaatattcaagtgTGACTCGTGTGAATATGAGACAAAGCGTAGGGCTAACCTTAAGAGACATTCGTTGGTCCATAAAAGTGTTTCAGACATAACGATGTTCAAATGTACAATATGTGATTATCAGACAAAACATAAGGGTTCTCTTAAGGCACACATTTCACTCCATAGCAGTCCTTCAGAGGTAGCAATGTTCAATTGTGAAATATGTGAATTTAAGACAAGATATAAGAGATATTTGAACCAGCACAAATTGACACATGACAGTACGTTGGATATTACAAAGTTTAAATGTGTATTGTGTGAGTTTGAGACAAAACGTAAGTATTATCTTAAGAAGCACTTATTGGTTCATAAAAGTTCTTCAGACATAACGATGTTCAAGTGTGCAATATGTGATTATCAGACAAAACGTAAGAATTCTCTTAAGGCACACATTTTGCTCCATAGAAATCCTTCAGAGTTAACAATGTTCACTTGTGAAATATGTGAATTTAAGACAAGATATAGGAATAGTTTGAACCAGCACAAAATGACACATGAAAGTACGTTGGATATTACAAAGTTTAAATGTAAATCGTGTGAATTTGAGACAAAATATAAGAAATCTCTTAAGGTGCACTCGTTGATCCATAAAACTCCTTCAGAATTAACGATGTTCAAGTGTGAAATGTGTGAATTCGagacaaaacataaaataaatctGAATCTACACAAAATGATCCATAAAAGTACATCGgagttaaaaatgtttaaatgtgataTGTGTGAATTCGAGACAAAGCGTAAGTATAATCTTAGGTCGCACATGTTGATCCACAAAAGTCCCTCAGAGATAGAAATGTTCAAGTGTGCATTTTGTGACTTTGAGTCAAAACATAGGTCTGcttttaagttgcatttaaaCAAGCTCCATAACAGCTCTTCAGAGATAACCATGTTCAAATGTAGAAAGTGCATATTTAAGACAAGATATAAGAGTCATCTGAACCAGCACGAGATGGCCCATAAAAATGTTGAAGTGTGCAATGTACGAGTACCAATTTCTTAA
Protein Sequence
MRALSLADLKNDVSLDSVNIENTNNLKSVMELPDERKCSFCTKTAERILVSLLESKENMFLVDMLEKHVPELNLSTVEELSTCETCFDRMQSVSKFLTKFSDVEEKVSKYIEIEGTDDKGQIELQHVQQFISKPILKFESESCQINELGQTYDCAQEFPIKAEDEITCETEGDNLEAFIKTEYADVNTEQDNCDRFQEPSAEFTLDNEHQDPLNITVDKFDAYTYETTRMNHHISHKNRPPRTTFKCEMCAYRSTFLHCFTRHKLTHKNSSEIKKFKCEVCPYEAKRKDSLNTHMLIHKGPSEVIMYKCDTCPYETKRKCRLNEHSLIHKCPSETKMFKCDLCAFEAKRKRAVKRHMLTHTNPPKLYKCEICAYETNFKLYIVRHKLIHNNPSEVIMYKCNTCAYMTKSKSRLSEHGLTHKAPTEITMFKCEICTFEAKRKRGVKRHMLTHKNHSEMAIFKCKMCPFETIYEYNYKMHLLRHKEFSRYKCEICTFWTNHKGSLNEHKLIHNSSSEITMFKCDMCTYKVKRKHDLKRHMLIHKDPSEVAKVKCEICGYETIHKNSLRRHILNHKRVPKVTILKCEMCNYVAKRKHDLKRHMLTHKDPSEVSKVKCEMCTFETIHNNCLKRHILKHKRVPTYKCDMCKFKTKINGNLRKHMNTDIFKYTVTCIECANNLQGFLNLKSACVGIRKRASLVANPGNDVSLDPVNTQNRKNLKPVTELKDDIGCSFCTKPTGEENFVALNESKENMFLVDILEKYIPELNVSNNGQLLSCKTCLDGMQRVSCFLTNCLYVEDKITKYIEIEGTDDRGQVELQNLQQFVFKPTIKFERQSCHVNATIQAHDSIREEFATKAKSEITYEIKTDNLDSFVNNENAGIKSDVDTKSEGRIIKSDVDFESKNDIKSEVVDIKCDDSIKSKDIDIKSEDVDIKLDVDDVFVESKYGINSEDMNIKSEDTVKLQDDIKSQEVDIKSEEIDMKSEESDHDRQSSHINATIQAHDSIREEFATKAKSEITYEIKTDNLDSFVKNENADIKSDVGTKSEGDVIKSDVDFESKNYIKSEVVDIKCDDSIKSKDIHIKSEDVDIKLDVDDVFVESEYGINSEDINIKSEDTIKLQDDIKSQEVDIKSEEIDMKSEESDHDRGETNKELEDEISMSIDILNDWYAANNLKLNINKTYLLKFSLRKEPPLVVNYNEQQLTSTDYTKFLGIVIDAQLSWKCHIEHLAKRISGFTYALRTISRSVSEDAAMASYYAYVNSRMSFKEPSVKINLDYDHKKSLVKTMYNCDMCTYETTHRDLLNDHLSTHKSHRGIKIFKCDSCEYETKRRANLKRHSLVHKSVSDITMFKCTICDYQTKHKGSLKAHISLHSSPSEVAMFNCEICEFKTRYKRYLNQHKLTHDSTLDITKFKCVLCEFETKRKYYLKKHLLVHKSSSDITMFKCAICDYQTKRKNSLKAHILLHRNPSELTMFTCEICEFKTRYRNSLNQHKMTHESTLDITKFKCKSCEFETKYKKSLKVHSLIHKTPSELTMFKCEMCEFETKHKINLNLHKMIHKSTSELKMFKCDMCEFETKRKYNLRSHMLIHKSPSEIEMFKCAFCDFESKHRSAFKLHLNKLHNSSSEITMFKCRKCIFKTRYKSHLNQHEMAHKNVEVCNVRVPIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-