Smel066748.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757316.1:12392627-12396910[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.38 54 6.8 2.0 1 23 54 76 54 76 0.95 2 18 0.0018 0.26 14.1 0.7 3 23 82 102 80 102 0.96 3 18 4.2e-05 0.006 19.2 1.7 2 23 115 136 114 136 0.96 4 18 8.4e-07 0.00012 24.6 0.6 1 23 142 164 142 164 0.98 5 18 2.4e-05 0.0034 20.0 0.3 1 23 170 193 170 193 0.97 6 18 0.0033 0.47 13.2 1.6 2 23 230 252 230 252 0.95 7 18 0.47 67 6.5 1.0 1 23 266 288 266 288 0.87 8 18 0.00098 0.14 14.9 1.8 1 23 305 327 305 327 0.96 9 18 6.7 9.5e+02 2.8 2.7 2 12 333 343 332 354 0.74 10 18 0.017 2.5 11.0 0.2 2 23 358 380 357 380 0.97 11 18 0.0003 0.043 16.5 0.9 1 23 391 414 391 414 0.97 12 18 2.1e-05 0.0029 20.2 1.1 1 23 423 446 423 446 0.97 13 18 0.06 8.5 9.3 1.6 1 22 452 473 452 475 0.89 14 18 0.003 0.43 13.4 4.6 3 23 487 508 485 508 0.94 15 18 0.1 14 8.6 1.8 1 21 517 537 517 538 0.94 16 18 0.002 0.28 14.0 1.0 1 23 553 575 553 575 0.97 17 18 0.002 0.29 13.9 0.7 2 23 581 603 581 603 0.95 18 18 0.048 6.8 9.6 0.6 1 19 609 627 609 633 0.91
Sequence Information
- Coding Sequence
- atgGAAGAAAAACCCATAAAAGAGGAAGTAATTTACGAGGAAATTTCTGATTTTCCTGTTGTAAGGGAACCCTTAAATGAAGAGTTGGAAAAGGACATTCCAGATTTtgtaaatgttaataattttgcAGATACACCCGAAGAAGAACTTAGAGAAATTTATTACTGCAATTACTGCAAGAACAAATATGGGAAATTCGAGTACTTACAAATACACGAATATATTCATGATCCTAGGAAACATTGTCCGATCTGTAATTTCACTTTCGCAGCGAAAAAGAATTATATCGTGCATATAAATGGACACATTAAGGAAAAAATGGAAGATGAAAGAAGGAGTTTAATTTGTGAATTCTGTAAGaaaacttttaagaaaaaaaggGCACTAACTCTTCACTTGAGAGTACATACTAATGAACGCCCATATAAATGCAACGTATGTGGTAAAGCGTTTAAGCAAAAAGGATCTCTAACGGACCACAATATTACTCATTCAAATGTTAAACCTTTTCCATGTGAGGTATGCTCAGGAACCTTTACAACTGCTTCCAGTTTGAGGAGACATGTAAAAAGGATTCATGATGCAGGAAAAACTTACTTCTGCCGAATTTGTTTGCAAAAAGTGGACAACTATACCTGTCTCCAGCTGCACAGGGCGGAATACCATCCAGAAGCCAGCGAGCGCCGCAAATGCTCTATTTGTTCCATGGTATTTAAAAGTGTGTACTcatttacaaaacataaaaaggaGGAGCATGGGATAGTTCCAGAGGACGTTCCGCGACCCAAATTCAGATTCAAGTGTCTCTTGTGTGgtgaaaagtttcaaaattataaacCATATGCTGAACACAAATATGGACACTTTCATTACAACAAAGAGGATTTTCAGAAAGCACAAGAAAATGAATTGTTTAGTTGCAAGTTATGCCAGAGGGATTTTCAAAATAAAGAAGGCCTTTTTAAACATATGGCGTTCCACATGGAAAAGACTTTGAAGTGTAATATTTGCCAAGAATTCTTCAGCTACTATGGATTTGCTTGCCACAAACGTAGAGTTCATTTACCTCTGAAGTGTAAAATTTGCAAGGAAATTGTTGAAGgTACAGGAAAGTTGATTCGCCACTACAGGACCATTCACCCAGACACAAATAAAATTCAAGACGGAAATTACGTGTGTCACGTATGTGAGAAGGTTTACAAATCTAAGTACCCACTAGATATGCATATACAAATTTATCACGGGAAAactgataatataaaaacacataaATGCAACGTTTGTGGAAGACAATTCACGACGAGAGGAACTCTCGGGGCTCACATGACTCGAGTCCACCCAACTAGTGCGAGGTTCAAGTGCGATTCTTGCAATGTTTTATTCCAGAACCGTTCTAAACTACGGAAACACAATGTTATCTATCATCAAGAAACCGTAATCAAAAAGAGGTCACTTTTCTGTACACATTGTAACCAAGCGTTTCGCACTCTTGCTTTACTCAAGCATCATAGGAAAGCAAAACATAGAGGTGTCAAACCTGCAACGAAGTTTCAGTGTAAAATATGCctgaaatatttcaaaagtttcaaGAATCGAGCGGAACATCTCAAAAATAAAGTGTGTACAAAATTCTTCGAGAAAACGAAAAAACAGTTGCACAAATGCACCGTTTGCCAAAGGAACTTTGTGTTAAGAATCTCGCTGTTTGCTCACATGGTGGTGCACTCGAAGTTCTACAACACGTGTAGGTTTTGCAATAAAATGTACGCAAGGATGCCAAACCTCAGGAACCATATTGAAAGCATGCATCTGGGTGAGAAGGCGTATTACTGTGGATTTTGCAATGAGGAATTCGAAGATTTCAAGCAGTTAAGAATTCACGGATACTCACCTTCCCATAGAGCAAAGATCGAATCTAGAACTGAAATTGTGGAAGAACCCGATGTTAAAAATAGTATTAGTGAGGAAAAAATCATCATGGAAGATGTAGAACTAAAAACCGAGCCGGTAGATTAA
- Protein Sequence
- MEEKPIKEEVIYEEISDFPVVREPLNEELEKDIPDFVNVNNFADTPEEELREIYYCNYCKNKYGKFEYLQIHEYIHDPRKHCPICNFTFAAKKNYIVHINGHIKEKMEDERRSLICEFCKKTFKKKRALTLHLRVHTNERPYKCNVCGKAFKQKGSLTDHNITHSNVKPFPCEVCSGTFTTASSLRRHVKRIHDAGKTYFCRICLQKVDNYTCLQLHRAEYHPEASERRKCSICSMVFKSVYSFTKHKKEEHGIVPEDVPRPKFRFKCLLCGEKFQNYKPYAEHKYGHFHYNKEDFQKAQENELFSCKLCQRDFQNKEGLFKHMAFHMEKTLKCNICQEFFSYYGFACHKRRVHLPLKCKICKEIVEGTGKLIRHYRTIHPDTNKIQDGNYVCHVCEKVYKSKYPLDMHIQIYHGKTDNIKTHKCNVCGRQFTTRGTLGAHMTRVHPTSARFKCDSCNVLFQNRSKLRKHNVIYHQETVIKKRSLFCTHCNQAFRTLALLKHHRKAKHRGVKPATKFQCKICLKYFKSFKNRAEHLKNKVCTKFFEKTKKQLHKCTVCQRNFVLRISLFAHMVVHSKFYNTCRFCNKMYARMPNLRNHIESMHLGEKAYYCGFCNEEFEDFKQLRIHGYSPSHRAKIESRTEIVEEPDVKNSISEEKIIMEDVELKTEPVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -