Smel064442.2
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757315.1:101813973-101838608[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.0022 0.32 13.8 3.7 1 23 28 50 28 50 0.99 2 33 0.00047 0.066 15.9 2.0 1 23 90 112 90 112 0.99 3 33 0.017 2.5 11.0 4.4 1 23 121 143 121 143 0.96 4 33 0.03 4.3 10.2 0.4 1 20 152 171 152 175 0.91 5 33 0.68 97 6.0 3.5 1 23 215 237 215 237 0.97 6 33 0.011 1.5 11.6 5.6 1 23 309 331 309 331 0.99 7 33 0.32 45 7.0 1.7 1 23 340 362 340 362 0.97 8 33 0.013 1.8 11.4 0.7 1 23 371 393 371 393 0.98 9 33 0.00098 0.14 14.9 2.0 1 23 402 424 402 424 0.98 10 33 0.004 0.57 13.0 4.6 1 23 433 455 433 455 0.98 11 33 2.9e-05 0.0041 19.7 1.4 1 23 462 484 462 484 0.99 12 33 0.0039 0.55 13.0 0.5 1 23 493 515 493 515 0.97 13 33 0.037 5.3 9.9 1.2 2 23 525 546 524 546 0.97 14 33 0.00049 0.07 15.8 3.5 1 23 555 577 555 577 0.99 15 33 8.4 1.2e+03 2.5 3.6 1 23 586 608 586 608 0.97 16 33 0.23 32 7.5 2.0 1 23 629 651 629 651 0.97 17 33 0.0007 0.099 15.4 0.5 1 23 660 682 660 682 0.98 18 33 0.0023 0.33 13.7 1.9 1 23 691 713 691 713 0.98 19 33 0.012 1.7 11.5 3.7 1 23 761 783 761 783 0.96 20 33 5.9e-05 0.0083 18.7 0.8 1 23 792 814 792 814 0.98 21 33 0.16 23 7.9 4.4 1 23 823 845 823 845 0.98 22 33 0.12 17 8.4 0.7 2 23 855 876 854 876 0.97 23 33 0.011 1.5 11.6 0.7 1 23 885 907 885 907 0.98 24 33 0.18 26 7.7 2.9 1 23 916 938 916 938 0.96 25 33 0.1 15 8.5 0.9 1 23 947 969 947 969 0.98 26 33 0.062 8.7 9.2 4.0 1 23 978 1000 978 1000 0.98 27 33 0.0035 0.5 13.1 0.7 2 23 1010 1031 1009 1031 0.96 28 33 0.058 8.2 9.3 4.6 1 23 1040 1062 1040 1062 0.97 29 33 0.099 14 8.6 3.5 1 23 1071 1093 1071 1093 0.94 30 33 0.019 2.7 10.9 4.8 1 23 1102 1124 1102 1124 0.97 31 33 0.13 18 8.3 0.3 1 23 1133 1155 1133 1155 0.98 32 33 1.7 2.4e+02 4.7 1.1 1 23 1164 1186 1164 1186 0.97 33 33 0.04 5.6 9.8 3.6 1 23 1195 1217 1195 1217 0.97
Sequence Information
- Coding Sequence
- ATGCATGAGTTACAAAAGGAACATAAAGGATGTGATAATCAGCATGATGTTACATATAAAAACTCTGATGGAAAGACAGTGTATAAATGTGAAGCGTGTCCATATGAAACAAAACGGCGGTATCATCTTAATCGACACAAATTGACCCATGAAAGAACTTCAGAGTTAACAGTGTTTAAGTGCCAGAGATGTTCGTATGAGGGAAAGTGCAGGAAACATCTTAAAGAGCATAAATTGATCCATAATAATTCTTCAGATGTAACAACGTTTAAGTGTGATCGATGTCCATATGAGACAAATCGGCGAAGAAATCTTAATCAGCACCAGTTAACCCATAAAAGTACTGTGGAGGTAACAATGTTCAATTGTGAATTTTGTTCGTATGAAACAAAACATAAGAGTAATCTAAAGCAACATACACTGCTTCATAGAAATCCTTCAGATGTAACAAAGTTTAAGTGTGAATCGTGTCCATATGAGACAATACGACAGGAAGATCTTAAAAAGCACAATGTTCAAGAACATCCCACCACAATTAAAACTGGTGGCGAGGATATTTCAATGCTCAAGTCAGAAATAGAACATAAAGATGATGATAATCAGCATGACTTGACCTACCGAAATTCTGATGTGAAGACGGTGTTCAAGTGCGAATTTTGTTCGTATGAAGCAAAACGAATGCATCAGCTAAATCAACACAAACTGCTCCATAAAAGTTCCTTAGATGCAAAATTCCTTTTGATGCATTATTATTACCACACTGTTGAGACTAGTTTGTCAGGTAAATACGAACGTACATTCGGAGTAAACATACACATAAGcTTGCAAGAACCTTCCACCACAATTGAAATTGATAATGGTTCCTTGGATACCTCACTACCTAAGTCACAAAGAGGACCTAAGAACTTCGAAGGGATAGCAACATATAAGTGTGAGACATGTCCATATGAGACAAAGCGTAAGTTTTGTCTTACACGGCATAAACTGACTCATAAAGGTACTACAGagttaacaatgtttaagtgtgatctTTGTTCATATGAGGCAAAATCTATGGATCATCTGAATATGCACAAACTACTCCACGATAATTCCTCAACTGTAACAATGTATAAATGTGAACTATGTCCATATGAAGCAAGCCGTCGGAATAATATTCAACGCCACAAATTGTCACATAAAAGTGCTTTAGAGGTAACACTGTTCAAATGTGAACTGTGCCCACATGAGTCGAAACGTCAGGATGACCTTAAACGACACAAATTGATCCATAAAAGCACTTCAGAGAtaacaatgtttaaatgtgaaaagTGTACGTATGAGTCAAggcataaatataatttaaaccaACACAGACTGATCCATGAAAGTTCTTCAACAGTATTTAAGTGTGAGCTATGTCCATATAAGACAAGACGTTGGCAAAATCTTAAACGACACGTATTGACCCATGAAAGTAGTCCAGTGGTTGAAATGTTTAAATGTAAAGAGTGTCCATATGAGGCAAAGCGTCGGGATTATCTTAAATTGCACGAATTAATCCATAAGAGtacttcagaagtaacaatgctTAAGTGTGATCTTTGTTCATATGAAACAAAACGTATAGATTATCTAAAACAACATAAACTAACCCATAAAAGTTATTCAGATATAACACTATTTAAGTGCGAATTGTGTCCATATAAGGCAAGACGTCGGGATCATCTTAAACGACACACATTGACCCATAAGAATACTTCAGAGATAGCAATGTTCAAATGTGAACTGTGTCCATATGAGACGAAATGTCGGTATTATATTAAACGACACACATTGGTCCATAAAAAAACTCCAAGGTTAACAATGCAACTATTGCAGAAAAGTTCTTCAGACGTAACAGTATTTAAGTGTGAACTGTGTCCGTATCAGGCAAAAAGTGAGGAACATATTAAACGACACAGATCGAACCATAAAAGCTCTTCAGAAATAAGAATGTTTAAATGTGAACTGTGTCCATATGAGACAAGACGTTGGGATTATCTTGAACTACACAAATTAACTCATAAAAGTATCTCGAAGGTAACAGTATATAAATGCGAAACGTGTCCATTTAAGTCAAGAACTAAAGGAGGTCTAAAAAAACACAGACAGCTTCATTCAACAGAAGCAACAATGTTTAAGTGCGAACTATGTCCATATAAAGCAAAACGTCGagttcAAGAACGTTCCAGGGTAATTAAGATTGATAATGGATCTTTGGACACTTCGGCATGTACAAGTGTTTCAGACGTAAAGAGATTTAAATGTGAAGTGTGTCCGTTTGAGACGAGACATAAAAGAAATCTAAACCAACACAGACTATTCCATAAAAATCCATCTGATAAAACAATGTTTAAGTGTAAAGTATGTCCATATGAGTCAAAACGTTGGAGTCAACTTAAGCAGCATGCGCTGACTCATAAAAATATTTCGGAGTTAGTACTGTTTAAGTGCAATCTATGTTCATATGAAGGAAAATGTAAGGACTACCTTAAACGACACATGTTGACTCATAAAAGTACTTCAGAGTTAACAATGGTTAAGTGCGGTCTCTGTTTATATGAGGTAAAAAATAAGCAATCTCTTGAACGGCACAAATTGAAACACAAAAGCACTACAGATAAAACAAAGTTTAAATGCAACTTATGTCCGTATGAGTCAAAACGGTGGAGTCAAATTATACAACACAATTCAACCCATAAAAGCTCCTCAGAGGTAATGAAATTTAAATGTGAAACGTGTCCATTTAAAACAAAccgtaaaaataattttgaccaaCACAAACTGCTCCATGAAAATCCAGCAGATATTACAATGTTCAAGTGCGATCTATGTCCATATGAGGCAAGATACATGCAATATCTTAAACGACACAAACTGATACATAAAAGTgtctcagaagtaacaatgttcAAATGCGATCTATGTTCATATGAGACCAAACGTCGTCTGCATCTTAAGCAACATAAATTAGTCCATGTAAGCAATTCAGATATAGCAATGATTAAGTGCGACCAATGCCCATATGAGGCTAAACGCAAAGATGATCTTAAACGACACAAGTTAAACCATAAGAGCCCTGCAGaattaacaatgtttaagtgtgatctCTGTCCATATGAGACAAAATATAAGCACTATCTTAAACAACATAAATTGAACCATACAAGTGCATCAGATACAACAACGTTTAAGTGTACACAGTGTCCATATGAAGCAAAACATAAACGATATCTTAAAAAGCACGAAGTGAACCATAGAAGCGCTTTAGAATTAACGATGTTTAAGTGTGATCTGTGTCCATATGAAACAAGACATAAGCACTCTCTTAAACAACACGAATTGAGTCATAAATGTGCTTCGGAGTtaacaatgtttaaatgtgatcTGTGTCCGTATGAGGCAAAGCTTATACAATATCTTAAACGACATCAGTTGATTCATAAGAGCCCTTCAGAGGTgacaatgtttaaatgtgaagTGTGTGCATTTGAAACAAAACGTGGGGATTATTTTAAAGTACACAAATTAAATCATAGCAGTACTTCTgaagtaaaaatgtttaaatgtgaattttgttCGTATGAAGGAAAACGTTTGGATCATCTAAAACGACACAAACTGCTCCATAAAAGCTTTTCAGATGTGATAATGTTAAACGACACATATTAA
- Protein Sequence
- MHELQKEHKGCDNQHDVTYKNSDGKTVYKCEACPYETKRRYHLNRHKLTHERTSELTVFKCQRCSYEGKCRKHLKEHKLIHNNSSDVTTFKCDRCPYETNRRRNLNQHQLTHKSTVEVTMFNCEFCSYETKHKSNLKQHTLLHRNPSDVTKFKCESCPYETIRQEDLKKHNVQEHPTTIKTGGEDISMLKSEIEHKDDDNQHDLTYRNSDVKTVFKCEFCSYEAKRMHQLNQHKLLHKSSLDAKFLLMHYYYHTVETSLSGKYERTFGVNIHISLQEPSTTIEIDNGSLDTSLPKSQRGPKNFEGIATYKCETCPYETKRKFCLTRHKLTHKGTTELTMFKCDLCSYEAKSMDHLNMHKLLHDNSSTVTMYKCELCPYEASRRNNIQRHKLSHKSALEVTLFKCELCPHESKRQDDLKRHKLIHKSTSEITMFKCEKCTYESRHKYNLNQHRLIHESSSTVFKCELCPYKTRRWQNLKRHVLTHESSPVVEMFKCKECPYEAKRRDYLKLHELIHKSTSEVTMLKCDLCSYETKRIDYLKQHKLTHKSYSDITLFKCELCPYKARRRDHLKRHTLTHKNTSEIAMFKCELCPYETKCRYYIKRHTLVHKKTPRLTMQLLQKSSSDVTVFKCELCPYQAKSEEHIKRHRSNHKSSSEIRMFKCELCPYETRRWDYLELHKLTHKSISKVTVYKCETCPFKSRTKGGLKKHRQLHSTEATMFKCELCPYKAKRRVQERSRVIKIDNGSLDTSACTSVSDVKRFKCEVCPFETRHKRNLNQHRLFHKNPSDKTMFKCKVCPYESKRWSQLKQHALTHKNISELVLFKCNLCSYEGKCKDYLKRHMLTHKSTSELTMVKCGLCLYEVKNKQSLERHKLKHKSTTDKTKFKCNLCPYESKRWSQIIQHNSTHKSSSEVMKFKCETCPFKTNRKNNFDQHKLLHENPADITMFKCDLCPYEARYMQYLKRHKLIHKSVSEVTMFKCDLCSYETKRRLHLKQHKLVHVSNSDIAMIKCDQCPYEAKRKDDLKRHKLNHKSPAELTMFKCDLCPYETKYKHYLKQHKLNHTSASDTTTFKCTQCPYEAKHKRYLKKHEVNHRSALELTMFKCDLCPYETRHKHSLKQHELSHKCASELTMFKCDLCPYEAKLIQYLKRHQLIHKSPSEVTMFKCEVCAFETKRGDYFKVHKLNHSSTSEVKMFKCEFCSYEGKRLDHLKRHKLLHKSFSDVIMLNDTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -