Smel031835.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757311.1:135590292-135595499[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0093 1.3 11.8 3.8 1 23 146 168 146 168 0.97 2 14 0.042 5.9 9.8 3.6 3 23 176 196 175 196 0.96 3 14 5.5e-05 0.0078 18.8 2.9 1 23 203 225 203 225 0.96 4 14 0.0011 0.15 14.8 0.5 1 23 320 342 320 342 0.98 5 14 5e-07 7.1e-05 25.3 5.3 3 23 350 370 349 370 0.98 6 14 0.0015 0.22 14.3 2.7 2 23 394 416 393 416 0.94 7 14 1.4e-05 0.002 20.7 1.8 3 23 500 520 498 520 0.96 8 14 0.003 0.43 13.4 0.8 1 23 526 549 526 549 0.92 9 14 2.4e-06 0.00035 23.1 0.8 1 23 554 576 554 576 0.98 10 14 1.6e-05 0.0023 20.5 0.6 2 23 587 608 586 608 0.97 11 14 3.8e-07 5.4e-05 25.6 0.9 1 23 615 637 615 637 0.97 12 14 4.4e-05 0.0062 19.1 1.6 3 23 649 669 647 669 0.92 13 14 0.00014 0.02 17.5 4.4 1 23 675 697 675 697 0.99 14 14 0.051 7.2 9.5 0.4 1 16 703 718 703 720 0.83
Sequence Information
- Coding Sequence
- ATGATTACTAAAGAAATAGAATTGATAATAGATAAGATCTGCCGCTGCTGCATGTGTGAGAATGAAAATATGCACAAtgtgtttgaaaataaaaaagatgcAGGAGACTCCTCCTCAATACTTCTTTCAGAAATGTTGATAGCTTGTGCCTCTGTAGAGGTGGTATTTGGAGACGGATTACCATACAACTTATGTGACTCGTGTGAAAGCAAATTAAATACAGCCTATGAATTCAGACAACAATGCCAAAAAACAGATTCAGCTCTCAGGGAATTAGCAAATGCTGAATCAAAGGATAACATAACAAAACAAGAAGATATTATAATACAACCAGATGTTCCAGAGGATTTGTTTGATGAAGAAGATAATTTGCCGTTAATCAAACGTGGTGTAAAACGTAAACGTGGAAGACCAAAGAAAAAAGATGGTGACAATTTTGCTTGTACATTTTGTCATAAAGTATTACACACGAAAAAAGGTTTGCGTGTGCACTTAAGAGCACATACAGGTGAGAAAATGAGACACTGTTTGTTTTGCGATGCAAAGTATACTCGTACTAATCATTTAATTCGCCATATTGGCACACATGATAAACCTGGGTTGACACATCCATGTGAACATTGTGATAAAACTTTTACTGCCGCATCCGATTTGTTCAAGCATTCTAGAGAACATGAGGAAGTTGAAAACAAAGATGATTCTATTAAACAggaagaagaagaaataaaaCCTGACGTACAACCTGTAGAAGAGTGTGTTAAaccaaatgaaaataatttagatgatgTGGAATATATTgatgataataatgataattttgctGACTTTCCATTTAGTGATGACGGTGATGATAATCAAGCAGACAGTGATGAAGATTTCATTGTGAATATCAAAAAGGAGAAGAAAGatcaaaataaaaagaaaaaatctgaaGATATAGAAAAGGATAAGGCCTTGTATCCATGTAAAGAATGTACTAAGATTATGACAACATATATCGGATTGAAAATTCATATGAGGAGACATACTGGAGCCAACTTATCATTCTGTGAATTATGTAATAAATCGTTTACAAAGCAAAGCCATTTGAACAGGCATATGCGAACGCATGGAATTATAGATGCAGAGAAACTGAAATCGTTCAAACAAACTACAGATGCCAAAGGAAAAAggGTTATGGAATGCGATTTTTGTGATCGTAAAtttaaatacagaaaaagttttgTTCATCACATGCAAGCGGAGCATGGTATGTCAGACACTGAGAGTGACTTTGCAAATCCTGAAGATGCAGCAGCTAAGGATAAAACAGAGTTAGATAGCTCTAAACAGACTACAGAAGTAGAAGGGGCCACCGATCAAAATAACGAATCCTTTGAGCAAAAACCTGAAATCATCAGTGATGCTGGGCTGGACCAAACTGTAATTGATGATGAAGATGGTATACCACAAACAGTAAATGTGGTAGTGAAAAAAGTTAGAAACAAAAACCAAATTTGTCATGTATGTGGTGTGAGTTTTGCAAGAGCTAATCATCTCACTAGACATATGACCCTGCATCGAGCAGTTTTGGTGCATCAATGTGACCGTTGCGAGAAAGCATTTGCTACTGACGACTTTCTTAAAAAGCATGTTGAGGAAGAACATATTAATAAACCATACGTTTGTACAGTGTGTAATAAACCATTCAGTAGAGGCGAGCATTTAATTAGGCACTTGAAGGTGCATCAGCCCAATCCTGATAAGGAAGCAAATCTTAAGTGTTCAATATGTGATTCCACATTTACTAGATCTGATCTTCTGGCACGTCACACCAAAGTTCATCTGCTGCAAGACAAACGTCATGTGTGCGTCGAGTGTGGCAAGGCATTTAACAGACTGGATAATCTGAAGACCCACCAAAGGATACACACCGGAGTGAAGGACACTTCCAAACTACATTTGTGCATCTACTGTGGAAAGGAATTCAATAATTCCAGTAACATGATTGTACACATGCGTAGACATACCGGAGAGAGACCTTACAAATGTAGCGAATGTGGCAAAGGTTTTCCGAGGTCGCATGATTTGAAGTGCCATGAGAGGACGCACTCTGGGGAAAAACCTTACTTATGTACTTTATGTGGAAAATCATTTAACAAAAGTAACAAATTGGTAAGTTGCGGGTTTGTTGCACTAATAATATCAACAGCCCCATTTTTGTTATCTGACAATAACAGTGTTGCATCGCCTAAGCTAATTCACTTAATTGTCAAATTAGATTGA
- Protein Sequence
- MITKEIELIIDKICRCCMCENENMHNVFENKKDAGDSSSILLSEMLIACASVEVVFGDGLPYNLCDSCESKLNTAYEFRQQCQKTDSALRELANAESKDNITKQEDIIIQPDVPEDLFDEEDNLPLIKRGVKRKRGRPKKKDGDNFACTFCHKVLHTKKGLRVHLRAHTGEKMRHCLFCDAKYTRTNHLIRHIGTHDKPGLTHPCEHCDKTFTAASDLFKHSREHEEVENKDDSIKQEEEEIKPDVQPVEECVKPNENNLDDVEYIDDNNDNFADFPFSDDGDDNQADSDEDFIVNIKKEKKDQNKKKKSEDIEKDKALYPCKECTKIMTTYIGLKIHMRRHTGANLSFCELCNKSFTKQSHLNRHMRTHGIIDAEKLKSFKQTTDAKGKRVMECDFCDRKFKYRKSFVHHMQAEHGMSDTESDFANPEDAAAKDKTELDSSKQTTEVEGATDQNNESFEQKPEIISDAGLDQTVIDDEDGIPQTVNVVVKKVRNKNQICHVCGVSFARANHLTRHMTLHRAVLVHQCDRCEKAFATDDFLKKHVEEEHINKPYVCTVCNKPFSRGEHLIRHLKVHQPNPDKEANLKCSICDSTFTRSDLLARHTKVHLLQDKRHVCVECGKAFNRLDNLKTHQRIHTGVKDTSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLVSCGFVALIISTAPFLLSDNNSVASPKLIHLIVKLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -