Smel031839.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757311.1:135617591-135634226[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0032 0.46 13.3 5.0 1 23 146 168 146 168 0.97 2 14 0.0075 1.1 12.1 2.0 2 23 175 196 175 196 0.97 3 14 0.00052 0.074 15.8 4.3 1 23 203 225 203 225 0.97 4 14 0.00028 0.04 16.6 0.8 1 23 320 342 320 342 0.98 5 14 6.1e-05 0.0087 18.7 0.7 3 23 406 426 404 426 0.96 6 14 0.0014 0.2 14.4 1.1 1 23 432 455 432 455 0.92 7 14 6.4e-05 0.009 18.6 1.0 1 23 460 482 460 482 0.98 8 14 9.5e-05 0.013 18.1 0.3 2 23 493 514 492 514 0.96 9 14 5.7e-07 8.2e-05 25.1 0.8 1 23 521 543 521 543 0.97 10 14 2e-05 0.0028 20.2 1.6 3 23 555 575 553 575 0.92 11 14 5.2e-05 0.0074 18.9 1.6 1 23 581 603 581 603 0.98 12 14 9.7e-05 0.014 18.1 3.2 1 23 609 631 609 631 0.96 13 14 1.4e-05 0.002 20.7 0.4 1 23 637 659 637 659 0.98 14 14 0.0013 0.19 14.5 0.2 1 23 665 689 665 689 0.93
Sequence Information
- Coding Sequence
- ATGATTACTAAAGAAACAGAATTGATAATAGATAAGATCTGCCGCTGTTGTATGTGTGAGAATGAAAATATGCACAATGTATTTGAGAATAAAAAAGATGCAGGAGGCTCCTCCCCAATGCTTCTTTCAGAAATGTTGGTAGCTTGTGCCTCTGTAGAGGTGGTATTTGGAGACGGATTACCATACAACTTATGTGACTCGTGTGAAAGCAAATTAAATACAGCCTATGAATTCAGACAACAATGCCAAAAAACAGATTCAGCTCTCAGGGAATTAGCAAATGCTGAATCAAAGGATAACATAACAAAACAAGAAGATATTATAATACAACCAGATGTTCCAGAGGATTTGTTTGATGAAGAAGATAATTTGCCATTAATCAAACGTGGTGTAAAACGTAAATGTGGAAGACCAAAGAAAAAGGATGGTGACAATTTTGCTTGTACATTTTGTCATAAAGTATTACACACGAAAAAAGGTTTGCGTGTGCATTTAAGGACACATGCAGGTGAGAAAATGAGACGCTGTTTATTTTGCGATGCAAAGTATACTCGTACTAATCATTTAATTCGCCATATTGGCACACATGATAAACCTGGGTTGACCCATAAGTGTCGACATTGTGATAAGACTTTTACCGCCGCAGCCGATTTGTTTAAGCATTCTAGAGAACATGAGGAAGCTGAAAACAGAGACGATATTATTAAGCAGGAAGAAGAAGAAATAAAGTCTGACATAGACCCTGTAGACGAGAGTGTTAAACCAAATGAAAGTAATTTAGATGATATGGAGAATATTGATGATAATAATGATGATTTTGCTGATTTTCCATTTAGTGATGACAGTGATGATAATCCAACAGACAGTGATGAAGATTTCATTGTGAATATCAAAAAGAAGAAGAAAGatcaaaataaaaagaataaatctGATGGTACAGAAAAGGATAAGGTCTTGTATCCATGTAGAGAATGTACTAAGGTTATGAAAACATCCAATGGATTAAAGATTCATATGCGGAAACATACTAGAGCCAACTTATCATTCTGCAAAGTATGGGTCACTGATCAAAATAACGAATCTTTAGAGCAAACAGCTGAAATCATCAATGGTACTGGATTGGACCATAATGtaattgatgatgatgatgatgatgatggtataCCACCGATAGTAGATGTGGTAGTAAAAAAAGTTAGAAGCAATAGCCAAATTTGTCATGTATGTGGCATCAGTTTTGCAAGAACTAATCAACTTGCTAAACATATGACCCTGCATCAAGCAGTTTTAGTGCATCAATGTGACCGTTGCGAGAAAGCATTTGCTTCTGAGGACTTTCTTAAAAAACATGTTGAGGAGTATCATATTAATAAACCGTACGTTTGCAGAGTATGTAATAAATCATTCAGCAAAGGCCAGTATTTGATTAAGCACTTGAAAGTGCATCAGCCCAATCCGGATAAGGAGGGAAATCTTAAGTGTTCAATATGTGATTCCACTTTTActagTTCTGATCTTCTGGCAAGTCACATAAAAGATCATATATTACAAGACAAACGTCATGTGTGTGTCGAGTGTGGTAGAGCATTTAACAGACTGGATAACCTTAAGGCCCACCAGAAGACCCACACCGGAGTTAAGGATACTTCCAAACTGCATTTGTGCATCTACTGTGGAAAGGAATTCAGTAATTCCAGTAACATGATTGTACATATGCGTAGACATACTGGAGAGAGACCTTACAAATGTAGCGAATGTGGTAAAGCTTTTCCAAGGTCGAATGATTTGAAGTGTCATGAGAGGATACACTCTGGAGAAAAACCATACCTATGTACTTTATGTGGAAAATCATTTAACAAAAGTCACAAACTAGTCCGACACAGCAGAGTGCATACTGGTGAACGTCCCTATGTTTGCAATATATGTGGCAAAGGTTTTACACAATCTAATATCTTATCACTCCATATGCGACGTCATACTGGTATTCGTCCATATGCATGTGGTGTCTGCCCAGCTCGTTACAATCAATCTGGACAGTTGAAGACCCACCGTAAGACAACCGGTCACTTGATGGACACAAAGCCAGAGCTCAAAGGAGGGTACAGAGTTGAACCAGTTACACCTACTCGTGAACCAAGGCCTATTATGTTTAAATCGCATGGAGAACCGAAGAAGGAAGTTGTGAAGGAACCTCCGACTTTGGAACCGCAAAGTATGCAGGAAACTGTAGAAACCCAAAGTATAGAGGAAATTATTGTTGAACCAAAAGTTGAATTGATTTAA
- Protein Sequence
- MITKETELIIDKICRCCMCENENMHNVFENKKDAGGSSPMLLSEMLVACASVEVVFGDGLPYNLCDSCESKLNTAYEFRQQCQKTDSALRELANAESKDNITKQEDIIIQPDVPEDLFDEEDNLPLIKRGVKRKCGRPKKKDGDNFACTFCHKVLHTKKGLRVHLRTHAGEKMRRCLFCDAKYTRTNHLIRHIGTHDKPGLTHKCRHCDKTFTAAADLFKHSREHEEAENRDDIIKQEEEEIKSDIDPVDESVKPNESNLDDMENIDDNNDDFADFPFSDDSDDNPTDSDEDFIVNIKKKKKDQNKKNKSDGTEKDKVLYPCRECTKVMKTSNGLKIHMRKHTRANLSFCKVWVTDQNNESLEQTAEIINGTGLDHNVIDDDDDDDGIPPIVDVVVKKVRSNSQICHVCGISFARTNQLAKHMTLHQAVLVHQCDRCEKAFASEDFLKKHVEEYHINKPYVCRVCNKSFSKGQYLIKHLKVHQPNPDKEGNLKCSICDSTFTSSDLLASHIKDHILQDKRHVCVECGRAFNRLDNLKAHQKTHTGVKDTSKLHLCIYCGKEFSNSSNMIVHMRRHTGERPYKCSECGKAFPRSNDLKCHERIHSGEKPYLCTLCGKSFNKSHKLVRHSRVHTGERPYVCNICGKGFTQSNILSLHMRRHTGIRPYACGVCPARYNQSGQLKTHRKTTGHLMDTKPELKGGYRVEPVTPTREPRPIMFKSHGEPKKEVVKEPPTLEPQSMQETVETQSIEEIIVEPKVELI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -