Basic Information

Insect: Stenurella melanura
Gene Symbol: -
Assembly: GCA_963583905.1
Location: OY757314.1:139721396-139730644[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.4e-08 3.5e-06 29.4 1.5 1 23 341 363 341 363 0.99

2 12 6.4e-06 0.00091 21.8 7.2 1 23 369 391 369 391 0.98

3 12 9.4e-06 0.0013 21.3 0.8 1 23 397 419 397 419 0.99

4 12 0.083 12 8.8 3.2 1 23 425 447 425 447 0.95

5 12 0.00066 0.094 15.4 0.9 1 23 453 475 453 475 0.98

6 12 8.5e-07 0.00012 24.5 3.0 1 23 481 503 481 503 0.96

7 12 8.6e-06 0.0012 21.4 2.1 3 23 510 530 510 530 0.99

8 12 9.5e-06 0.0013 21.2 2.8 1 23 536 558 536 558 0.99

9 12 3.2e-05 0.0045 19.6 3.0 1 23 563 585 563 585 0.98

10 12 4.4e-06 0.00062 22.3 4.1 2 23 592 613 591 613 0.98

11 12 3.3e-07 4.7e-05 25.8 1.8 1 23 619 641 619 641 0.99

12 12 2.3e-05 0.0032 20.0 0.9 1 23 647 669 647 669 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.4e-08	3.5e-06	29.4	1.5	1	23	341	363	341	363	0.99
2	12	6.4e-06	0.00091	21.8	7.2	1	23	369	391	369	391	0.98
3	12	9.4e-06	0.0013	21.3	0.8	1	23	397	419	397	419	0.99
4	12	0.083	12	8.8	3.2	1	23	425	447	425	447	0.95
5	12	0.00066	0.094	15.4	0.9	1	23	453	475	453	475	0.98
6	12	8.5e-07	0.00012	24.5	3.0	1	23	481	503	481	503	0.96
7	12	8.6e-06	0.0012	21.4	2.1	3	23	510	530	510	530	0.99
8	12	9.5e-06	0.0013	21.2	2.8	1	23	536	558	536	558	0.99
9	12	3.2e-05	0.0045	19.6	3.0	1	23	563	585	563	585	0.98
10	12	4.4e-06	0.00062	22.3	4.1	2	23	592	613	591	613	0.98
11	12	3.3e-07	4.7e-05	25.8	1.8	1	23	619	641	619	641	0.99
12	12	2.3e-05	0.0032	20.0	0.9	1	23	647	669	647	669	0.97

Sequence Information

Coding Sequence: ATGTCAACCGAAATACCCTTTAGTTTGCGGAGTGGCTGTAATGGACTAATAATGGATAATGTTATAAATGTAGCAGATTGTTGTAGGGCATGTTTAAGAATAGATTGCACCCTAACCCCTACGAGTGCCCAGGATAACGATTCTATTAAATTTTATGATAAACTCTTATCATGTGTTTCAGAAGTGACTTGGTTAAAAGAAGGTTTACCATCTCTAATATGTGGAACATGCATAGAAAGGCTACGAATTGCTTACGACTTTAGATTAGTGTGTCTACAGTCAGACCATACATTGAACAGGTATATCAGTCATCTTCAAGACGACAAACATCTTCAAGAAGAGCACAAGCAACACCTCCCTGATGAAGGCAAACAACTTATAAATTTAGTTGGAAGGCCACTAACGACACCCACAAAATTCGAGTTTGCTATACCAACAAGTACCAGTGAAGTTCTACCAATTATTGGTGAAGATCCGCAGAATGCCGAATATCTACATTTAAAGCATTTTTTGGATAGCGAAGAGGATCTGACGAAAACCGAAAATTTAGTTGATACTGCTGCCTCGAGGAGTACTAGTCCCGATTCTGCTTCAACAAGTTTCATCAATGACCAGTCACATTTGCAACAGTCTCAATTACCGCAGCAGCAAATACATCAGAGTCAACATGCATTGCAACACCAGCAGCAGCAGCATCAGCAGCAACAACAAATCCATCAACAACAACAAGAACAACAGCAACAGCATCAACATCAGCACCAGCAACAGCAATCACATCAACCTGATCATCTCGACCATCACTCTTCGCAGCCACAACAAACTCAAGAACAACAAACTCATCAGACCCACCAAGAAATGCAGACGTTAGTTTTACAGACTATGACGTCTGTGTCTCAAACTGTAACAGCTACAACTCAGCCAGTGATTCAGCCACGTCAAGTTATAAAACGCACAACTGGTATTCAGGTGAGACCTCCCACGCCAAACACCGGTGATCCAGACTCTGCGGACGTTAAACCGTTCACTTGTACCGAGTGTGGGAAAAGTTacagaaaaaatgcaaatttaagaATCCACATGAGAACCCATACTGGCGAAAAACCATTCGAATGTAAATATTGTGAGAAAAGGTTTTACCATTCCTCTCATCTGAGAGAACACATCCGTCGCCATACGGGTGAAAAACCGTTCCAATGTGCGGTGTGCAACAAAAGATTCACCATCAAGGGCGAACTTACGATGCACATGAAATCTCACACCGGCGAAAAGCCTTACGCTTGCACGTGCTGCGATCGCAGGTGTCTCACTGCGGCCGATTTAAAGGTCCACATGCGCACTCACACAGGAGAAAAACCGTTCAGCTGTGTGACTTGTGGAAAAAAATTCGCAAGTACTTACATTCTAAACTCACACATTAAGACTCACACAGGCGAAAGGCCGTACTTGTGTACAGCCTGCGACAAAACTTTCACTCAGTCTTCGCATTTAAACGTTCATATGCGAAAGCACACAGGCGAAAAAGTGGGTTGTAAAATTTGTGACGCCAAGTTTACACATTCTTCTCAGTTGACGGTGCATATGAGGGAACACACCGGCAAGCAACCATACAAATGTACCATGTGCGATAAAATCTGCAACTACGCCTCGGAGCTACAAACCCACATGATGAAGCATACAGGGGAGAAATTTACGTGCGTCACTTGCGATAAAAAGTTCACGACGGCAGCGTATTTACACGAGCATACTCGTACGCACACCGGGGAAAATTTGTCTACGTGCACGATCTGCGACAGGCAGTTCACTCGGCATCAATATCTAGAAAAACATATGAGAACGCATACCGGAGAGAAGCCTTATACGTGTTtcatttgtagcaaaaaatttactCAGTCTTCGAGTCTAAAAGTTCATATTCGAATACATACGGGGGAAAAACCGTACGCTTGTAACGTTTGTGAGCGAAAGTTTACCACTTCCTCGGACCTGTCGGCACataataaaaaacacaaaaaatatatcaACTTGTAA
Protein Sequence: MSTEIPFSLRSGCNGLIMDNVINVADCCRACLRIDCTLTPTSAQDNDSIKFYDKLLSCVSEVTWLKEGLPSLICGTCIERLRIAYDFRLVCLQSDHTLNRYISHLQDDKHLQEEHKQHLPDEGKQLINLVGRPLTTPTKFEFAIPTSTSEVLPIIGEDPQNAEYLHLKHFLDSEEDLTKTENLVDTAASRSTSPDSASTSFINDQSHLQQSQLPQQQIHQSQHALQHQQQQHQQQQQIHQQQQEQQQQHQHQHQQQQSHQPDHLDHHSSQPQQTQEQQTHQTHQEMQTLVLQTMTSVSQTVTATTQPVIQPRQVIKRTTGIQVRPPTPNTGDPDSADVKPFTCTECGKSYRKNANLRIHMRTHTGEKPFECKYCEKRFYHSSHLREHIRRHTGEKPFQCAVCNKRFTIKGELTMHMKSHTGEKPYACTCCDRRCLTAADLKVHMRTHTGEKPFSCVTCGKKFASTYILNSHIKTHTGERPYLCTACDKTFTQSSHLNVHMRKHTGEKVGCKICDAKFTHSSQLTVHMREHTGKQPYKCTMCDKICNYASELQTHMMKHTGEKFTCVTCDKKFTTAAYLHEHTRTHTGENLSTCTICDRQFTRHQYLEKHMRTHTGEKPYTCFICSKKFTQSSSLKVHIRIHTGEKPYACNVCERKFTTSSDLSAHNKKHKKYINL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310755; iTF_01014853; iTF_00886695; iTF_00110769; iTF_00166264; iTF_01227549; iTF_01290589; iTF_01013604; iTF_01296717;
90% Identity: iTF_01290589;
80% Identity: -