Basic Information

Insect: Stenurella melanura
Gene Symbol: -
Assembly: GCA_963583905.1
Location: OY757313.1:10085034-10088533[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00022 0.032 16.9 0.8 2 23 159 180 158 180 0.97

2 16 0.026 3.7 10.4 0.7 3 23 187 208 185 208 0.91

3 16 0.097 14 8.6 0.7 3 23 223 244 221 244 0.93

4 16 0.00035 0.049 16.3 0.2 2 23 259 280 258 280 0.96

5 16 0.0061 0.86 12.4 2.9 2 23 287 308 286 308 0.97

6 16 6.1e-05 0.0087 18.7 1.5 1 23 316 338 316 338 0.99

7 16 2.8e-07 4e-05 26.1 0.8 1 23 343 365 343 365 0.97

8 16 0.0026 0.37 13.5 4.9 1 23 371 393 371 393 0.98

9 16 0.00067 0.095 15.4 3.6 1 23 399 421 399 421 0.96

10 16 0.0015 0.21 14.4 3.1 1 23 427 449 427 449 0.97

11 16 6.3e-07 8.9e-05 24.9 1.1 3 23 457 477 455 477 0.96

12 16 2.2e-08 3.1e-06 29.6 0.1 2 23 483 504 482 504 0.97

13 16 0.00021 0.029 17.0 2.8 1 23 510 532 510 532 0.96

14 16 1e-05 0.0015 21.1 0.8 1 23 538 560 538 560 0.98

15 16 6.7e-05 0.0096 18.6 3.8 1 23 566 588 566 588 0.99

16 16 3.1 4.4e+02 3.9 0.2 1 20 594 613 594 615 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00022	0.032	16.9	0.8	2	23	159	180	158	180	0.97
2	16	0.026	3.7	10.4	0.7	3	23	187	208	185	208	0.91
3	16	0.097	14	8.6	0.7	3	23	223	244	221	244	0.93
4	16	0.00035	0.049	16.3	0.2	2	23	259	280	258	280	0.96
5	16	0.0061	0.86	12.4	2.9	2	23	287	308	286	308	0.97
6	16	6.1e-05	0.0087	18.7	1.5	1	23	316	338	316	338	0.99
7	16	2.8e-07	4e-05	26.1	0.8	1	23	343	365	343	365	0.97
8	16	0.0026	0.37	13.5	4.9	1	23	371	393	371	393	0.98
9	16	0.00067	0.095	15.4	3.6	1	23	399	421	399	421	0.96
10	16	0.0015	0.21	14.4	3.1	1	23	427	449	427	449	0.97
11	16	6.3e-07	8.9e-05	24.9	1.1	3	23	457	477	455	477	0.96
12	16	2.2e-08	3.1e-06	29.6	0.1	2	23	483	504	482	504	0.97
13	16	0.00021	0.029	17.0	2.8	1	23	510	532	510	532	0.96
14	16	1e-05	0.0015	21.1	0.8	1	23	538	560	538	560	0.98
15	16	6.7e-05	0.0096	18.6	3.8	1	23	566	588	566	588	0.99
16	16	3.1	4.4e+02	3.9	0.2	1	20	594	613	594	615	0.92

Sequence Information

Coding Sequence: ATGGgcgaattattaaatatttttcacccaACTGAAACTGATATAAGAAAAATTTGTAGAATATGTATGAATACTCTATCGAATAATGGTATGGCAATTTTTGAGACATTAGAAGAAAGCAAATACAGCTTGGCAAGTAAAATTATGGCTTGTGCTTCTGTTCAGGTCGTTGATGGAGATGGACTACCATCAGTTGTTTGCCAAACTTGTTGCGGGTTATTAAATActgcttttttattaaaaaagcaaTGTGAAGAATCAGATGCGGCTCTACGATATTATTTAGCGAATTATGACAAGGTACTGAATGAGAGTAAATCTGCTACAAAGCCTTCTTTTGACTCAAATGATGTTGATTCTATTGATAACGATCTCTATCCAGAACACTCTGATAACGGTAGTGATACCGAAGAAACTTCTAAAGAAAAAGTAGCAGTTGCAAAATCTCTTAGCTATACATCAGAAAAACCATTAAAATGTGATATTTGTGCGAATAGTTTTAAGAAACTAAACCAACTTAAATTGCACATGCGCATACATAGAAAGAAAGCATCAAACTGCAAAATTTGTTTAGAAAAATTTAGTTCTCTGTATGAGTTATCCCAACACAATAAGGCGCAACATGGAAAGGCCATTAAGGTGAAGACTGAGGAAACAACTCACCTGTGTTCAGTATGTGAAGagaaatttttagataataaatcATTGATAGATCATATGCTTTTAAATCACACGGAAAAGCGGGTTAACGTATCTGACATATCAAAACAGTTAATTTGCAATATTTGTAACAAATCCTACTTAAATAATAGAAATTTGGCAGCTCACATGGGTACCCATACAGGAAATAAACCTCtcgaatgtaatatttgcaaaaAGAGATTCACGCAAGGTAGAGCCTTCGCCTGCCACATGAGAACGCACtccgatgaaattgaaaaaccctataaatgtaccaaatgtcAGAAAGCTTTTGCAAAAGAGAATCAGTTGTCTGTTCATGTTAAGAAACACAGCGGGCAGGCgcatatttgtaatatttgtgggAAAAGCTATAGCAATTCTGGAAATTTGAATGGCCACATGCGTTTGCACACTGGAGATAAACCTTATACATGCCACATCTGTGGTCGAAAATTCGCCCAAAGTAATGCTCATTCATACCATATGAAAACCCACTTTGGAGATAAACCGTTCTCTTGTGATTGCTGCTCAAAGTCTTTTACAACTAATGGACAACTTATCAATCACCGTAGATTACATACAGgcgAGAAACCGTTCGCGTGTACATTGTGCCCCAAGAAGTTTACCCAGAAGTTTGCCTGCACTATTCACATGATGACTCACACTGGAGACAAACCCCATCTGTGCAGTATTTGCGGCAAGAAATATTCCCAAAGTAGTCAATTAGCTGAACACATGAGAGTACATAACGGTGAAACACTACAATGCAATATTTGCGGCAAAGCCTACACAACCTCTGGTAACCTCGCCGCTCACATGCGTACCCACACAGGCGTTAAACCCCATGCTTGCGATATTTGCCATAAAGCCTTTTATGTTCCCAACAAGCTGGCTAAACATAAGCGTACCCACACTGGCGACAGACCCTACAACTGTAATGAATGTTCTAAAAAATTTGTATCCTTGGAATCCTTGAAGATCCATGCTAGAACCCACACTGGCGAACGCCCTTACACCTGTCAATATTGCAGTAAGAGTTTTATAAGTGGCTCTCATCGTACAGCTCACATGAAGACTCACAGCGAGATGAAGTCGTACATTTGTGGAGTGTGTTGTGGATCTTTTGGTAGTTCTTCAGAAATGACAGCACATCAGACACTTTGCAATAAAACGGATAGGGACATGTACTCAAATTTAAATGGGGAATTTGTGTAA
Protein Sequence: MGELLNIFHPTETDIRKICRICMNTLSNNGMAIFETLEESKYSLASKIMACASVQVVDGDGLPSVVCQTCCGLLNTAFLLKKQCEESDAALRYYLANYDKVLNESKSATKPSFDSNDVDSIDNDLYPEHSDNGSDTEETSKEKVAVAKSLSYTSEKPLKCDICANSFKKLNQLKLHMRIHRKKASNCKICLEKFSSLYELSQHNKAQHGKAIKVKTEETTHLCSVCEEKFLDNKSLIDHMLLNHTEKRVNVSDISKQLICNICNKSYLNNRNLAAHMGTHTGNKPLECNICKKRFTQGRAFACHMRTHSDEIEKPYKCTKCQKAFAKENQLSVHVKKHSGQAHICNICGKSYSNSGNLNGHMRLHTGDKPYTCHICGRKFAQSNAHSYHMKTHFGDKPFSCDCCSKSFTTNGQLINHRRLHTGEKPFACTLCPKKFTQKFACTIHMMTHTGDKPHLCSICGKKYSQSSQLAEHMRVHNGETLQCNICGKAYTTSGNLAAHMRTHTGVKPHACDICHKAFYVPNKLAKHKRTHTGDRPYNCNECSKKFVSLESLKIHARTHTGERPYTCQYCSKSFISGSHRTAHMKTHSEMKSYICGVCCGSFGSSSEMTAHQTLCNKTDRDMYSNLNGEFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01296707;
90% Identity: -
80% Identity: -