Smel012175.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757309.1:194188057-194211323[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.041 5.8 9.8 1.0 2 23 71 93 70 93 0.96 2 22 0.0023 0.33 13.7 0.6 1 23 117 139 117 139 0.98 3 22 0.066 9.3 9.2 0.4 1 23 143 165 143 165 0.97 4 22 0.02 2.9 10.8 0.3 1 23 171 194 171 194 0.95 5 22 0.00012 0.017 17.8 3.5 1 23 200 222 200 222 0.96 6 22 0.061 8.7 9.3 0.2 1 23 228 251 228 251 0.90 7 22 0.00028 0.04 16.6 1.1 2 23 263 285 262 285 0.92 8 22 0.00012 0.018 17.7 2.0 3 23 299 319 297 319 0.96 9 22 6.3e-05 0.009 18.6 0.9 1 23 325 347 325 347 0.98 10 22 3.4e-06 0.00048 22.6 0.1 1 23 353 375 353 375 0.99 11 22 3.7 5.2e+02 3.7 0.3 1 10 381 390 381 393 0.90 12 22 0.38 54 6.8 1.9 2 23 471 492 470 493 0.93 13 22 0.06 8.6 9.3 0.3 1 23 512 535 512 535 0.97 14 22 0.0043 0.61 12.9 1.7 1 23 539 561 539 561 0.98 15 22 0.0031 0.44 13.3 2.2 1 23 567 590 567 590 0.98 16 22 0.037 5.3 9.9 0.4 1 23 596 618 596 618 0.88 17 22 0.015 2.2 11.1 0.8 1 23 624 647 624 647 0.95 18 22 0.00093 0.13 15.0 0.7 2 23 659 681 658 681 0.96 19 22 4.8e-05 0.0068 19.0 1.0 3 23 695 715 693 715 0.96 20 22 4.5e-05 0.0064 19.1 1.5 1 23 721 743 721 743 0.97 21 22 6.9e-07 9.7e-05 24.8 0.5 1 23 749 771 749 771 0.98 22 22 0.038 5.4 9.9 0.1 1 21 777 797 777 798 0.96
Sequence Information
- Coding Sequence
- ATGAATGAAACTGCTTTTCCCAAATCCATACCGGTGTACCGAACACTGCAAGATTGGCATGGTCGACTAACAACTAAAAGTTCACGCCGGAAGGaacttaataaattaaaaaaatcaaaacaaaaatcaTCCAGTAGAGAAAAGAAACTTAGAATAAGAAAAACTAGGTATGTTCCGAAACAAAAACCCAATCAGAGAGCAAGGAGTTGGACATGTAAAATTTGCTTTGATGAATTTGATTCAAGGAAAAACTTGTTTGACCACAGAAAATCAATTCACGAGGACACAGATGATATTATGGCGAGCGAAGAAGTCGAAAAATTCATATACGATGAAGAACATGAGTTCTACACCTGCAATAATTGCTCTGCTGAATTCCAGACCAAGGAAGAAGTAGAACGGCATTATGAAACGCACGAAGAAAAATACGATTGTCAAGTGTGTAACAAAACTATCACTGGGGCCTTAAACTTTTCGTCCCATTTACAGCAGCACAGAGAGGATAAACATTTTCCTTGTCCATTATGTACACATATTACCAGTAGAAAATCAGCTATGTTAATTCATATAGTTCGCCTGCATTTCAGAAAATACGACTTTCAATGTCAGTTATGCGGAAAATGTTTCAACGATGCCTCCACCTTTAAggaacatgaaaattttcatttagGAGTGAAACCCTTCATCTGTATTGTATGCAACAAAGATTTTGTATATTCGCGATATTTAGTCGCACATCAAGTTCGCAACCACAGAGTGCGCGTATTGGACAAGGAGTCCAAAACTCAATGCCACATGTGTTCAAAAATATTTGCCAGAAATGAGACGCTAATAAAGCACGTGTTAGCTAAGCATTTGTCATATAACGATGGGCCCGCCGAAAAGAAACACTTGTGCGATGTGTGCGGTCAAGGATTCTCTAGAACTGACAAACTCAAAATTCACTATAGAAAGCATACTGGAGAGAAACCTTACTCCTGTGTTTATTGCagtaaaagttttataaaaaaggATTACTTGATTATGCATGAAAGAATACATAATGGAGAGAAACCATatgtttgtaatatttgtgacAAAAGCTTTAATCAGGGGGCTCCTTTGAGAATCCATATGCGCAGTCATACTGGCGAACGACCCTACATCTGTCCTCATTGCAATATGGGgttttttccTGCCTTAGAAGTGGAGCTGAAAGTGGACGATGACGATTATGATGtagttaatttatataaaaaggaCAAAAAGAAATCATCACCTGAGAAGTTATTACCCCTTAAGAAGAAGATAAAAGTCGAAATAGACGATGAATACACCCCGCCAGGAGTAAAAAAGAAGAAATCACAAACTCCAAGCCCGCCCAaaccaagaaagaaaaaattaaaatgcaaaCAAGAACACAAAATTTGGACGTGTAGAAGATGTTTGGCGGAGTTCGAGACAAGAAGAGATCTAACCGAACACACGAAACTCCATCACGTTGAAGAACCAAAGGATCAGCATACCTTCAAATATGACGAGGAGCAAGAATTATATACTTGTAATACCTGTTCAGCAGAATACCAATCAAAGGAAGAAGTCGAAAATCACATCACGAAAATACATGAAGAATTTTACACCTGTGAAGTTTGTAAGCACACCTCAACGAAAGCGTATAGTTTTGCAGTCCATATGAAAGCTCATAGTGATGATGACACTTACACGTGTCCTTTGTGCAGCTATAATACAGCTCGAAGGACATGTCTTCAAACTCATATAAACAGAGTTCACTACCACAAGTTTTACTATACCTGTGGAACGTGTGGAAAAGGCTTTAATGACTCTGTTATTTTTAAAGAACACAACAATGAACATCTGGGAATAAAGCCTTTCATTTGCGTCGTATGCAACAAGGAATTTGTTTACTCCAGATATATGCTGATTCATCAAACTAGGTACCATACTGTACATATTGAAGGGACTCTTCACAAGACCCAATGCAGTATTTGCTTGAAAGTTTTCAGCAAGGTGGCTACTCTGCTGAAGCACATTACCACGAAACACAGCAATATAGGTGACGACAAACCTGAAAAGAGACATTTGTGCGATATGTGTGGCAAGGGATTCGGTACATCTGATAAGCTGAAAATACATTATCGAATACATACGGGCGATAAGCCTTTTGCCTGCCGATACTGCGATaagaaattcacaaaaaaagATTATTTGGTTATGCACGAGAGAGTACATACGGGTGAGAAACCTTACCCTTGTGAATATTGTGGTAAATGTTTCAATCAGGCAGCTTCCTTAAGAATCCACGTTCGTGGACATACCGGGGAACGACCGTACGTCTGTCAGTTTTGCAATGGGGGCTATATTTCTCGAGGGTCACTTAATTTACATATGAAAATATGTAATGGTGTCACTGCCTAA
- Protein Sequence
- MNETAFPKSIPVYRTLQDWHGRLTTKSSRRKELNKLKKSKQKSSSREKKLRIRKTRYVPKQKPNQRARSWTCKICFDEFDSRKNLFDHRKSIHEDTDDIMASEEVEKFIYDEEHEFYTCNNCSAEFQTKEEVERHYETHEEKYDCQVCNKTITGALNFSSHLQQHREDKHFPCPLCTHITSRKSAMLIHIVRLHFRKYDFQCQLCGKCFNDASTFKEHENFHLGVKPFICIVCNKDFVYSRYLVAHQVRNHRVRVLDKESKTQCHMCSKIFARNETLIKHVLAKHLSYNDGPAEKKHLCDVCGQGFSRTDKLKIHYRKHTGEKPYSCVYCSKSFIKKDYLIMHERIHNGEKPYVCNICDKSFNQGAPLRIHMRSHTGERPYICPHCNMGFFPALEVELKVDDDDYDVVNLYKKDKKKSSPEKLLPLKKKIKVEIDDEYTPPGVKKKKSQTPSPPKPRKKKLKCKQEHKIWTCRRCLAEFETRRDLTEHTKLHHVEEPKDQHTFKYDEEQELYTCNTCSAEYQSKEEVENHITKIHEEFYTCEVCKHTSTKAYSFAVHMKAHSDDDTYTCPLCSYNTARRTCLQTHINRVHYHKFYYTCGTCGKGFNDSVIFKEHNNEHLGIKPFICVVCNKEFVYSRYMLIHQTRYHTVHIEGTLHKTQCSICLKVFSKVATLLKHITTKHSNIGDDKPEKRHLCDMCGKGFGTSDKLKIHYRIHTGDKPFACRYCDKKFTKKDYLVMHERVHTGEKPYPCEYCGKCFNQAASLRIHVRGHTGERPYVCQFCNGGYISRGSLNLHMKICNGVTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00328436;
- 90% Identity
- -
- 80% Identity
- -