Smel054164.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757314.1:113223799-113239060[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.01 1.5 11.7 0.1 1 23 171 193 171 193 0.95 2 18 0.0072 1 12.2 0.9 2 23 200 221 200 221 0.98 3 18 9.4e-07 0.00013 24.4 1.0 1 23 227 249 227 249 0.98 4 18 0.0057 0.81 12.5 0.1 1 23 255 277 255 277 0.96 5 18 4.7e-06 0.00067 22.2 0.5 2 23 284 305 283 305 0.97 6 18 4.7e-05 0.0067 19.0 5.0 1 23 311 333 311 333 0.97 7 18 1.1e-05 0.0015 21.1 3.4 1 23 339 361 339 361 0.97 8 18 5.2e-05 0.0074 18.9 1.7 1 23 367 389 367 389 0.98 9 18 5.1e-07 7.3e-05 25.2 0.3 1 23 395 417 395 417 0.98 10 18 2.2e-05 0.0031 20.1 6.2 1 23 423 445 423 445 0.98 11 18 0.00018 0.026 17.2 0.5 1 23 451 473 451 473 0.97 12 18 5.5e-05 0.0078 18.8 3.2 1 23 644 668 644 668 0.95 13 18 9.1e-07 0.00013 24.4 0.6 1 23 674 698 674 698 0.98 14 18 6.7e-06 0.00095 21.7 4.7 1 23 704 726 704 726 0.98 15 18 0.0056 0.8 12.5 0.3 1 23 732 756 732 756 0.95 16 18 2.5e-06 0.00035 23.1 0.6 1 23 762 786 762 786 0.97 17 18 0.00081 0.11 15.2 0.6 1 23 792 816 792 816 0.94 18 18 0.0027 0.39 13.5 1.8 1 23 822 845 822 845 0.97
Sequence Information
- Coding Sequence
- ATGGAACATGAGAAAAATAACTGGAACACATATAACGAGAATATAAATTGTGAACAATCAAtcaaatatgataaaacatgCAGAGCTTGTTTGACTGAAAATGACAATATGATTTCAATTTACCACCCGGAGATAAAAGATATGTTTACATTTTGTACATCATTGGAACTAAATAATGACGACAAGTTACCTGGTCTCATTTGCTCCCAGTGCAGGACAGATTTGTTACGAGCCCACAATTTCAAGGATTTATGTATAAAATCAAATAATATCCTAGAAGAACACATATCCCGATATAAAATTGATGATATAGAACttaatttaaatgaattattaaagACAGATCTCTGTGACCCAAgtataaacataaattgtgattTAGCAAAAGACGAGAGTAGCGTCATAGATATAGTAGATAAGCAGATTAAGGAAATTATAGATGAACATATTAATAACTGTGATGAAGACGACAATAGTATTACCAGTAATCAATCATTAAAAGATAATCTTTATAAATGTAGTATTTGTTCTGCAACTTTTACTTTAGAGATAGATCTCGAAACTCATAAAATCGGCCACCCCAATGATGGTGTTCCAAAATGTACATTGTGTAATAAGCTGTTTAACGATGCAAAGATTTTGAGAAGACATGTTCGCATACACCTGAAGGCAAAGCCGTTTCCGTGTAACATGTGCAACAAGAGTTTTTCAGaaTCGGGGAGTTTAACCCGCCATGTAAGAAAGCACAGAGGAGAAAAACGGCACATCTGTTCAGCATGTGGAAAAGGTTTCTATGAAGCTAATGTTTTGGCCGTGCATATGAGGATACACACTGGGGAAAAGCCGATAACTTGTGATATTTGCAGTAAGAAATTTTCGGACCCAAATGGTCTAAGGAGTCATATGAAATCTCATACCGGTGAAAGAAACCATGTGTGTACTGTTTGTAACAAATCCTTCTCACATTCCTTTGTATTAAAGAAACACTTAAGGGTACACAGTGGAGAGCGACCCTTTATTTGTCAGACTTGTGGGAAATCTTTCACGCAGAGCCATTACGTGAAAATTCACATGAGGCAGCATACTGGTGAATTACCGTACATGTGTATGATTTGCAAAAAGGGCTTCACTCAACATAGTCAAATGGAAATTCACCTGAGAATCCATACTGGAATTAAACCATATATCTGTCAGGTTTGTGGAAAAACTTTTGCAAGGTCCGGTGACCTGAGTACCCACTTGAGGTCACACACTGGAGAGAAACCGTTCTCATGTACCTATTGTCATAAGCAGTATGCCACATCAAGCCATTTAAAAGTTCATTTAAGGTCACATACAGGTGAACGGAACCACATGTGCGTTACGTGTGGAAAAAGATTTGTTGAAAGTCAAGGGCTAAAAGCACATGTACGAATCCATACGGGTGAGAAGCCTTATATGTGCGAAGATTCTCCAAAAGAGGAAATTTTTCAATACTATACAGTTGTAAATGAGGCAGAAAACGTGGAGAATGTTGAAAAAGAAGGTCACAGAAATGAAGTTGTTTTCTTAACCATTAATCCTGAAGATTCTGTTGCGAGTGAAACAATGGAGAATTTGGAAGTCCCAGAACTTCCGGAAGATAATATAGAAGAACATAATGGTTTATCATCACTTGGGTCTAATGTAAAAATCATTACTCTAGAGGATGGCAGAATTTTTATGACAACGTCCTCTGAAGatgaaaattttgagTCCATTGAACCCCATCTAATCACCGATGATAGTACTACCAACGATAACGAAACTGAAGAGGAGGAATCAACAGAAAATTCAAATGATGatACAAAGTATGAAATCATACAGATAGGTAATTCACCTCAACTGTACCAGATGGTATACTGCGATGTTGAATCGTCTAATGAACAAGCCGCAAAGAAAGAAAAATCATATGTTTGTGTTCATGAAGGATGTGGAAAAATGTATACAAGCGCGCATCATTTAAATGTTCATATGCGCAACCATTCAGGCAGCAAGCCATATGTGTGTACCGAAGAACGCTGTGACAAGACATTCGCCACAAATTATTCTCTAAAAGCACACATACGAACTCATACAGGAGAGAAACCATATAGTTGTGTTATTTgccagaaatgttttaaaacttgtGGGGACTTACAAAAACACATTAGAATACATACAGGCGAGAAACCATTTACATGTCCAATTGAAGGATGCGGGAGGTCATTTACTACATCTAATATTAGGAAAGTTCATGTTAGATCTCATACGGGAGAGCGACCATACTCATGTGATTATCCAAATTGTGGGAAAGCATTTTCTTCATCTACAAACTACAAGAATCATATTCGAATACATTCTGGCGAAAAACCATATGCATGCAACGTAAAGGGCTGTGGTAAAAGATTCACGGAATACTCCTCGCTGTACAAACATAATTTAGTTCATCAACCTGACAGGCCTTACACATGTGTATTTTGTGGACAGAAGTTTAAACAAGACTCTACAATGAATCTACATAAAAGAGTACAACACAATGTGATAGTAGCCAATGATGGTAgagaaataattatatataactcCGACTTGGATATTGGTAATCAATTAATTAATATTCCTTAG
- Protein Sequence
- MEHEKNNWNTYNENINCEQSIKYDKTCRACLTENDNMISIYHPEIKDMFTFCTSLELNNDDKLPGLICSQCRTDLLRAHNFKDLCIKSNNILEEHISRYKIDDIELNLNELLKTDLCDPSININCDLAKDESSVIDIVDKQIKEIIDEHINNCDEDDNSITSNQSLKDNLYKCSICSATFTLEIDLETHKIGHPNDGVPKCTLCNKLFNDAKILRRHVRIHLKAKPFPCNMCNKSFSESGSLTRHVRKHRGEKRHICSACGKGFYEANVLAVHMRIHTGEKPITCDICSKKFSDPNGLRSHMKSHTGERNHVCTVCNKSFSHSFVLKKHLRVHSGERPFICQTCGKSFTQSHYVKIHMRQHTGELPYMCMICKKGFTQHSQMEIHLRIHTGIKPYICQVCGKTFARSGDLSTHLRSHTGEKPFSCTYCHKQYATSSHLKVHLRSHTGERNHMCVTCGKRFVESQGLKAHVRIHTGEKPYMCEDSPKEEIFQYYTVVNEAENVENVEKEGHRNEVVFLTINPEDSVASETMENLEVPELPEDNIEEHNGLSSLGSNVKIITLEDGRIFMTTSSEDENFESIEPHLITDDSTTNDNETEEEESTENSNDDTKYEIIQIGNSPQLYQMVYCDVESSNEQAAKKEKSYVCVHEGCGKMYTSAHHLNVHMRNHSGSKPYVCTEERCDKTFATNYSLKAHIRTHTGEKPYSCVICQKCFKTCGDLQKHIRIHTGEKPFTCPIEGCGRSFTTSNIRKVHVRSHTGERPYSCDYPNCGKAFSSSTNYKNHIRIHSGEKPYACNVKGCGKRFTEYSSLYKHNLVHQPDRPYTCVFCGQKFKQDSTMNLHKRVQHNVIVANDGREIIIYNSDLDIGNQLINIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -