Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.4 1.4e+03 1.6 1.7 12 39 68 92 60 95 0.72

2 8 0.0015 1.5 11.2 3.3 12 31 93 112 88 120 0.81

3 8 0.0014 1.3 11.3 1.4 18 38 127 144 113 150 0.82

4 8 0.087 87 5.5 7.1 18 43 159 181 157 182 0.86

5 8 0.0073 7.3 9.0 0.8 16 31 189 204 185 214 0.77

6 8 0.028 28 7.1 0.9 18 41 219 239 208 241 0.82

7 8 0.012 12 8.3 2.6 17 41 246 267 235 269 0.84

8 8 1.8 1.8e+03 1.3 0.1 18 24 275 281 271 287 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.4	1.4e+03	1.6	1.7	12	39	68	92	60	95	0.72
2	8	0.0015	1.5	11.2	3.3	12	31	93	112	88	120	0.81
3	8	0.0014	1.3	11.3	1.4	18	38	127	144	113	150	0.82
4	8	0.087	87	5.5	7.1	18	43	159	181	157	182	0.86
5	8	0.0073	7.3	9.0	0.8	16	31	189	204	185	214	0.77
6	8	0.028	28	7.1	0.9	18	41	219	239	208	241	0.82
7	8	0.012	12	8.3	2.6	17	41	246	267	235	269	0.84
8	8	1.8	1.8e+03	1.3	0.1	18	24	275	281	271	287	0.88

Coding Sequence: ATGAGAAATATTCCTAGAAAAACGCATGGAAAGTCTTGTCCCAAATCAGCtgcaaatagaaaaagaaaactACGAAAGTCTGATCTTGACATCGACCCTCTTGATCAATTTATAAATCTAGGTGAATCAAAGATACCTCTAGTGTGCTGTAGCTTAACTTTCGAAAGCAATGTAGACTTTGCATTACACTCTAAATTACATGATGATGACGGGCGATATACTTGCCATTTATGTgattacaaaaagaaaaacaaaacaaatattattaagCATGTCATGCGACATGATGTATTCAGATGTAAAATATGCAAAAagattttcaaaagaaaaaatagCGCAATTAAACACTCAAGAATGCACGCCACCAAGAAACCAGAACAATGTGAAATTTGTGGTAAGCAACTCAGCAATTCCAAGAACTTACGACTTCACCGTGAAATGGTACATTTAACTGGGAATCCTTTAATATACTACAACTGTACtatctgcaataaaaaatataaatcctCCAGTAGCTTGAGAAGGCATTGTTCATACAATCACAAAGAACTTGGAATAGACATGTCTGTAATTTGTGAAATTTGTGGAAAAAGTATTTCAACGAAAGGTGGCCTTCAAATTCATCTTAAAACGCATGCATCAAAAAAACCGTTTCCATGCAATATATGCTCTAAGACCTTTGCAACTAAATCCTTTCTAAGTGCTCATATGGTTAGGCACACTGGAGAAAAACCGTTTATTTGCAAATATTGTGGAAAGCGTTATGGGCACGGCTCGGCTTTCCGTTACCACATAAGAACTCATACAGGTGATCGCCCTTATACATGTCAGTTTTGTGGAAAAGGTTTTATTACCAATGcgaataaaaaaatacacataaaGAGTTGTTATGTTATTAACTAG
Protein Sequence: MRNIPRKTHGKSCPKSAANRKRKLRKSDLDIDPLDQFINLGESKIPLVCCSLTFESNVDFALHSKLHDDDGRYTCHLCDYKKKNKTNIIKHVMRHDVFRCKICKKIFKRKNSAIKHSRMHATKKPEQCEICGKQLSNSKNLRLHREMVHLTGNPLIYYNCTICNKKYKSSSSLRRHCSYNHKELGIDMSVICEICGKSISTKGGLQIHLKTHASKKPFPCNICSKTFATKSFLSAHMVRHTGEKPFICKYCGKRYGHGSAFRYHIRTHTGDRPYTCQFCGKGFITNANKKIHIKSCYVIN

Sequence clustering based on sequence similarity using MMseqs2