Smel075837.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- clz9
- Assembly
- GCA_963583905.1
- Location
- OY757317.1:70574902-70576998[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.4e-07 0.00018 23.4 0.0 2 40 22 59 22 63 0.90
Sequence Information
- Coding Sequence
- ATGCCTCGCACCAAGAAGCCCCGACGTGCTGATGCTCGAATATACGAATATAAGTCCTACTGTGATGATTCAATGAAAAGAGCTATCGAGGAAGTCCGAGGAGGTGGAAGTTATAAAGCTGTTGCCAACCGATATGGCATTAATAGAACGACTCTTATGAATCATGTGAAGGGaattaaatgcaaaaaaataggTCGTCCAACCGTCCTTACAAGAGAAGAGGAAGAGATTTTAGTACATACCTTGGTAAAACTTGGCGAATGGGGATATGGTTTCGACAGACTCCAACTGCAACGTTGCGTTCAAGATTATCTTCGCAGAATGGATAGGCCAAATCCATTTCATAACGGAATGCCTGGTCCAGATTGGTGCCTAATGTTTGAAAGAAGATGGTCAAAAGAAATAAGTCGACGTGTGGctcaaaatttaccaaaaaatcGGACCGCCGCAGGATCCCAAGAAGTAATGGAAGATTTTTATAACAAACTGAAGGATATAATTACACGTTTTGATTTACAAAATAAACCACAGAATATCTTTAATTGTGACGAAATTGGATTTCAAACAGATGCTGGCATACAGAAAGTACTTTGTAAAAGGGGTAGTCGTAATCCCAGCAAGTTGGTAGGAAGTGTTACAAAGGCGATGTACACAGTCCTTATGTGTTGCAACGCTATTGGTGACTTTTTACCGATGTTCATTAATTATAAAGGTCTACACCTGTATTCTACATGGTGCGTTGGGGGCCCAGAAAAGGCTCGCTATAATTGTTCACCGTCTGGTTGGATGGAGGCACCCCAGTTTTTGGATTGGTTTATAAACTCTTTTATTCCGGAAACTTTAAAATTAGATGGAACCAAGTTACTTATTCTAGATGGACATAACTCACATGTCTCCCTAGAACTTAAAGAGACGGCTGCAGAGAAAAAcatagaaatattttgtttgcctGCCCATACATCGCACCTTGTACAGCCATTAGATGTTGGTGTATACAAGGCCGTAAAGACGTCCTGGAGGGGAATACTTCGAGATTATTATAATGAGACAAGGTACAAAAATGTagataaattaatatttccaaCACTGATGAAGAAAATAAGTGAATCTGCTTGTTTGTCAAGGAGTAATGCAATTGGAGGCTTTGAGGGTTCTGGCATTTACCctttgtgtaaaaataaaatGATGAGAAAGATAGAAATTGCCAAAATCATTGAAGAGGGAGAAAATTTCAGTCTTCCTTCTACATCATCCCTTGGAGAATCAGTTGGAAGTGTGGCGGAAAATAATGTCCCATCTAAGTCTTCAAATTCTAGTTCCAAAAGTACTAATCAACCTACTGACAATCTAAAACAAGATATTGAACGTGCCATAATGACAGTTTTGCAATATAAACATGAGAAAGAAACGATTCCAAATAAGCGAAGTCGTGTATCTAGAAAATTCGCTGAAAGCTTAacagatgtggaagtaatagagaGAATGcAAAGTGATGACGAGGAGGATGATTTCTATGATTTGACAATTGAAAACAATACTAATGTTAACGAACTAGATAAAACTAATCATCTTCCAAATTTTACCCAAGACCGAGAATTAAATTTCCCAAAGGGCAACACTGATTTAAGCCATAATATTGATTCACAGGAGGTAACcgactcgaacaaaaataatcaCAATAAACAGGAACAACAGCCAACAGTTGTCGTAGGGATGTGGATATTAGCTAAGTATCGCACTAAAAAGGACGTAGTACATTATATAGGTAAAGTTTTAAACATATCTGACAATTGTGTAGAAGCTGATTTTCTTCGAAAAAAAGAACTTTATTTTGTGTATCCTGACATCCAGGACAAAGCCACGATTACCTTTGAAGATATCGATCAAGTTTTAAATGATCCAATCATTCAAAGAGGGAAACATTATTTTAAGATACAATATAAAacaggaataaaaatatattaa
- Protein Sequence
- MPRTKKPRRADARIYEYKSYCDDSMKRAIEEVRGGGSYKAVANRYGINRTTLMNHVKGIKCKKIGRPTVLTREEEEILVHTLVKLGEWGYGFDRLQLQRCVQDYLRRMDRPNPFHNGMPGPDWCLMFERRWSKEISRRVAQNLPKNRTAAGSQEVMEDFYNKLKDIITRFDLQNKPQNIFNCDEIGFQTDAGIQKVLCKRGSRNPSKLVGSVTKAMYTVLMCCNAIGDFLPMFINYKGLHLYSTWCVGGPEKARYNCSPSGWMEAPQFLDWFINSFIPETLKLDGTKLLILDGHNSHVSLELKETAAEKNIEIFCLPAHTSHLVQPLDVGVYKAVKTSWRGILRDYYNETRYKNVDKLIFPTLMKKISESACLSRSNAIGGFEGSGIYPLCKNKMMRKIEIAKIIEEGENFSLPSTSSLGESVGSVAENNVPSKSSNSSSKSTNQPTDNLKQDIERAIMTVLQYKHEKETIPNKRSRVSRKFAESLTDVEVIERMQSDDEEDDFYDLTIENNTNVNELDKTNHLPNFTQDRELNFPKGNTDLSHNIDSQEVTDSNKNNHNKQEQQPTVVVGMWILAKYRTKKDVVHYIGKVLNISDNCVEADFLRKKELYFVYPDIQDKATITFEDIDQVLNDPIIQRGKHYFKIQYKTGIKIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -