Smel052712.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenurella melanura
Gene Symbol
-
Assembly
GCA_963583905.1
Location
OY757314.1:83264516-83267071[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.8e-07 0.00014 23.7 0.0 2 39 13 49 12 55 0.87

Sequence Information

Coding Sequence
ATGCCAGCCACAAaaggaaatatgttaaaatactCTAAGGAACAAATGGAGGCCGCTATAGAGGCAGTTCACGGAGGATTAGCTGTTGCAACCGCAGCAAAACAATTTAATGTACCACGAATAACTCTACTTTATAAATCTAAAGGAAAATCTCCAAGAGGTCGAAAAATGGGACCTGAATCTTTTTTAACATATAACGAAGAAAAAGCAATAGTTAATTGGGTCATTACTGTAGCAAGAGCTGGATTTCCCATTGGAAAGGAACAACTTTTGGATAGTGTCCAAATGCTAGTAAGGGAATTAAATCGTGATACGCCCTTTACAAATAATCGTCCAGGAAAAAGCTGGTATGCAAGTTTCTTGAAAAGAAATCCAGAATTAAGTACCAGGACCGCACAAAATTTGACAGCCAGTAGAGCAGCAGTAAAAGAAGATCATATTCAGGGCTGGTTTACAGAAATTGGTaattatttggaacaaaataactACAAGGACATATTAAATgatccAAGCAGAGTATTCAACGGCGATGAGACAGCATTCTTCTTAAATCCGAAAGGCAATAGGGTACTGGCAGCAaaaggagaaaaaaatatttatcagcaCATCAACAATGATGAAAAGGAGTGTTTAACTGTTTTAATCACGGGCAATGCAGCAGGAGATCTAACTCCACCAATGGTGGTATTTAAGTATGAAAGGGTGCCAAGAGAAATAACACTCAGTATTCCTGATGATTGGGGGGTGGGGAAGTCGGAGAATGGCTGGATGACAGGCGTAACCTTTTACGAATACATAAGCAATATTTTTCAGCCATGGTTAATTAGGAAGGGGATCACACTccctgttattttatttatagatGGACATACCTCACATATGACACTGCACACAAGTAAATTTTGTGACTCACATGGTATAATTTTAGTGGCCTTATATCCTAATGCCACACACCTCATCCAACCTATGGATGTGGCAGTGTTTCGAACGTTAAAAGATGGATGGAAAACTAAAGTACATCAGTGGAGAATagataatttgaaatttccaatttTAAAAAAGGTTCATTTCTGTCCGTTGCTGCAGACGGTTTTAGATGAAAGAATCACAAAAGAAATATTGCAAAATGGTTTCCGTAAATGCGGTTTAGTACCTTGGAATTCTAAGGCcatttattgtaaaaaacatCCGGATGTGCATGATATCATATTAACCAAAACACGTTTAAAAGAAATAGAAGATGGAataattttcttggaaaaatatgtaaatacgGAAAAAATAAACACATTTAAGGCAAGTAACATAGATACATGGCAAGGAGATGTAGaagatttttcatttttcaaattttataaagaaactgTTGCAGAGAGAGttgaattgcaaaaaaaaatagatgattATAAGAAAAGTGATAAGAATAATCAAGTCGAAGAAGAAAATGATACATTCATACAGGCTTCTGCAGAATTTGGAGAGGAAAATGAAAATGATGCACTCGTGCAGGGTgatcaaaaaataaaagaaaataaaaataatgaattaattCAGTCTGATCCACAAATAgcagaggtaaatagaaatgATACTCTCTTACAACCCGATAAAGAAATAGGAGGAAATGATCCATTTATTCATTCTGCAGCAGAAATCGAAGAAAGTAATCAAAATGAGGCACCCATACAGCCTATGATAGTGATAGAAGAAACTGACCGTGACAGTATACAACCTTCTACATCTAGATGCGAAGTAACACCATTAAAAAACGTTGAAATAAACCAGAAATCCCCACAGCTAAAGGTTATTGTTGACCCTCTAATTCCATCACCTTTTAAACGTGTTCTGTTTTGGCCTGAACCGACGGAGCCGAAACACAAAAGAATGAAAGAGAAAATACCGTCTGTGGTCACTGCAAGACAATGGCAGTTGTATTATGAAAATAAAGAGAATATAAAAAAACAGAAAGAagaaattaaaaggaaaaaagCTGAGGAAAGACAACAGAAGAAAGAAATgcaggaaaaaattaaaaatgaaaaaaaagaactagcagaacagagaaaaaaactaaagggtgaaaaaattaaaaagaaaataaaaaatatatcgtcTGACTCAGACACAGAGGAAGAATGGGTACAATCGGGCTCCAGCTTAGATGATATAAGTGACGAGTTTTCAGATGATGTTCCTAATGAAGTATTGAATGAAACTTACAAGGTGGGAGAATATGTTTTAGTGTCTTTTCCAGGGAAGAAGAAAGAACATAAATATGTGTGTGTCATAcaacaaatgttgcccaacaaagAAGCTGAGGTGGTAGCCATGAATTGCTGTAATGAGCTTAAAACCACATTTAAACTTAATGAAAATGATATTAGTGTTATAAAATATGATCAGATACTTACCAAGTTAGGGTTTCCCAAGATGACTGCATCAGGGGATCGTTTGAAATACGAGTTCGATAATCCAATAAATGCTGATGGTTAG
Protein Sequence
MPATKGNMLKYSKEQMEAAIEAVHGGLAVATAAKQFNVPRITLLYKSKGKSPRGRKMGPESFLTYNEEKAIVNWVITVARAGFPIGKEQLLDSVQMLVRELNRDTPFTNNRPGKSWYASFLKRNPELSTRTAQNLTASRAAVKEDHIQGWFTEIGNYLEQNNYKDILNDPSRVFNGDETAFFLNPKGNRVLAAKGEKNIYQHINNDEKECLTVLITGNAAGDLTPPMVVFKYERVPREITLSIPDDWGVGKSENGWMTGVTFYEYISNIFQPWLIRKGITLPVILFIDGHTSHMTLHTSKFCDSHGIILVALYPNATHLIQPMDVAVFRTLKDGWKTKVHQWRIDNLKFPILKKVHFCPLLQTVLDERITKEILQNGFRKCGLVPWNSKAIYCKKHPDVHDIILTKTRLKEIEDGIIFLEKYVNTEKINTFKASNIDTWQGDVEDFSFFKFYKETVAERVELQKKIDDYKKSDKNNQVEEENDTFIQASAEFGEENENDALVQGDQKIKENKNNELIQSDPQIAEVNRNDTLLQPDKEIGGNDPFIHSAAEIEESNQNEAPIQPMIVIEETDRDSIQPSTSRCEVTPLKNVEINQKSPQLKVIVDPLIPSPFKRVLFWPEPTEPKHKRMKEKIPSVVTARQWQLYYENKENIKKQKEEIKRKKAEERQQKKEMQEKIKNEKKELAEQRKKLKGEKIKKKIKNISSDSDTEEEWVQSGSSLDDISDEFSDDVPNEVLNETYKVGEYVLVSFPGKKKEHKYVCVIQQMLPNKEAEVVAMNCCNELKTTFKLNENDISVIKYDQILTKLGFPKMTASGDRLKYEFDNPINADG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-