Basic Information

Insect: Stenurella melanura
Gene Symbol: PGBD4
Assembly: GCA_963583905.1
Location: OY757313.1:111911721-111920221[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 7.9e-08 1.6e-05 26.7 0.0 2 42 13 52 12 55 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	7.9e-08	1.6e-05	26.7	0.0	2	42	13	52	12	55	0.90

Sequence Information

Coding Sequence: ATGgccaataaaagtaaaaaaattcttaaatattcGGAGGGGAAAATGAAGGAGGCTTTAGCAGCTGCAAAAAGTGGAATGCCGGTAGCTACTGCAGCCAAGACTTATGGTGTGCCGAGAACAACACTGCTGTGTAAGTTAAAAGGAAAGTATCCAGAAGAGAGGAGGATGGGCCCTTCCACTTTCTTTACTACAGAAGAAGAAAACTTGATTGTAATGTGGATATTACAGATGGCAGAAAGAAAAATTCCTGTCACAAAACAAATGTTGCTTAATAGTGTGCGAAATTTGGCAACGGAATTGAGGAAAGGCGATTCCTGCAAAACAGGAAGGAAGTGGTTCAAATGCTTCATGAAAAGACATCCCAATATAAGCCAAAGAGTGAGTCAGAACCTAACTAGAAGTAGGAGGGAGGTTACTGAAACACAAATCCGAAACTGGTTCACCGAAATTCAAGATTATTTGACTCAACATTCCTTATTTGATATCCTACAACATGGCGACCGCATTTTTAATGCTGATGagtcagcattttttttaaatcctaaagGAGGTAAAGTTTTAGCGGCGAGAGGTGATAAATCTGTATATCAAGCCGCTAATAGTGACGAAAAAGAGTGTCTAACAGTACTAGTAAATTGCAGCGCCTCAGGGAAAATTGCACCCCCCAtgataatatttaaatatgtcagaataCCGACAATATTGGCTGAAAGCGTGCCCAAGGAGTGGGGCATAGGACGATCTGTAGATAGTGGTTGGATGACATCAGAAGGATTCTACGAGTATGTGACCAATATTTTTTATCCCTGGCTACTTTCAGAGAAGATCCAACTGCCGATAATATTATTCGTCGATGGGCATGTGTCACACATGTCCAtgcatttaagtaaattttgtgatgaaaaaggtataattttaattGGGCTATTTCCCAACTGCACACATTTATTGCAACCATTAGATGTTGCTGTTTTCAGAACACTAAAATCGGGATGGAAGGAGAAGGTTGCAGAATGGAGAGTGACCAATCAAGGATCTGACCTTAAGAGACATAATTTTGCACCGCTACTTAAAGCTGCTATTGATGAGCGTATTACACGAGACATACTAAAAAATGGATTCAGGAAATGTGGGTTGGTACCTTGGGACCCTAATGCTGTTCAGTTCGATAAAATTAAGAAACCTGATTTAGAGAAACAGACGCCCCAAgggaaaaatacaaatttaaaaattccaattGAAGTTTTGGAAAGATTTATTGGAACTGAAAAAATAGCATCATTTAAACAGTGTGAAGGTATCTGGACAGGTGAAATATCCGACACTTCTCTATATGTTGTTTGGAAAAATATGACGGACGCATCAATAATATCCGAAGAGAATAAACAGCAAACAATTCAGAATAACCACGAGAACTTGGAACAACAGATAAATTCAAATATCGATAAAATACAAGAAGACAACGAAGGGAATGAAGCATTACAGACAAACAATATTCACATCACTCCTGCAAAAAATGAAACTTATCCAGAAATCAATCAGGCGTTAAAATTGCCAACGCCATTCAAAAAGGCATTATTCTGGCCAGAAGAAACACCGACTTCATCTAAGACTaagaaaacaaaagaaaagaTTCCATCTGTAATAAGCTCCTCCTCGTGGCAAGAATACAACAGAAAGAAAAAAGCTGAAAAAGATAGAAAAGAACAAGAGAAATTAGAGAGAAAAAGGAAACGAGAAGAGAAAAAGAAAAGTAAGGACAACTGTAAGAAAATCAAGAAACAAACCAAGAGACACATTCAAGAATCAGAATCAGAAAGTGAGTCCGTTGAATATATGGAATCAGATGATTCATCATATTatgaagaacaagaagaagaacaagaatgTCTTAAAGCAGTGAATGAGGCGGAATTTCGAAAAGGGACGTATGTCTTAGTGGAATTTGTAGGGGATATACCTGATGAGTCAGATGAAGATGCTGAAGATGAAGTGGCCACACCAGAACCTTCGTATGTGCCCCCTGAATCGTCAGGTACTTCCGACTATTCGGACAGTGAGGATTCCGTTGACGACGTTCCACTCAATATTAGAAAGAGGCTTAGAGGCAACTGGTATGTAAGCCCTAATCTTTATAAGAATTTGCACGAGCAACCAACCAACGCATGTGGGACCGTAAAAAAGAATCTGAAAGGAATGCCAACCCTAGAAAAAGTTTTGGAACGTGAAGAAACGCAATACAAATCTACAACGAAACTTTTAACTTTGAAGTGGAAAGATAAACGTGAAGTAACCATGTTAACTACAATGCGTGATAGCGAAGTTGTCGGTACTGGAAAAATTGACAAACAAACTGGTAACGAAAAGAAGAAACCTCTGTGTATTCTGTACTATAACGCAAATATGGGGGCTGTGGATCGTTCCGATATGATGCTTAGCAGTACCGAATGTGTGAGGCGCACAGTAAAGTggtacaaaaaagtattcttccACTTATTAGATATTTCCATTTTAAACGCCCATGCTTTACATCTCACTGCAACGGGTAAGAAAATAAGCCTGGAAGCATTTCAGTTGAAGGTTGTAGACCAAATCCTAGAAAAATACCATAGACCTATATACGTCTGTCAAACAGGAAGAAGAAGTTGTGAAGAAGATAATCCCCTACATTTGACAGCTCGACATTTACCTATATAG
Protein Sequence: MANKSKKILKYSEGKMKEALAAAKSGMPVATAAKTYGVPRTTLLCKLKGKYPEERRMGPSTFFTTEEENLIVMWILQMAERKIPVTKQMLLNSVRNLATELRKGDSCKTGRKWFKCFMKRHPNISQRVSQNLTRSRREVTETQIRNWFTEIQDYLTQHSLFDILQHGDRIFNADESAFFLNPKGGKVLAARGDKSVYQAANSDEKECLTVLVNCSASGKIAPPMIIFKYVRIPTILAESVPKEWGIGRSVDSGWMTSEGFYEYVTNIFYPWLLSEKIQLPIILFVDGHVSHMSMHLSKFCDEKGIILIGLFPNCTHLLQPLDVAVFRTLKSGWKEKVAEWRVTNQGSDLKRHNFAPLLKAAIDERITRDILKNGFRKCGLVPWDPNAVQFDKIKKPDLEKQTPQGKNTNLKIPIEVLERFIGTEKIASFKQCEGIWTGEISDTSLYVVWKNMTDASIISEENKQQTIQNNHENLEQQINSNIDKIQEDNEGNEALQTNNIHITPAKNETYPEINQALKLPTPFKKALFWPEETPTSSKTKKTKEKIPSVISSSSWQEYNRKKKAEKDRKEQEKLERKRKREEKKKSKDNCKKIKKQTKRHIQESESESESVEYMESDDSSYYEEQEEEQECLKAVNEAEFRKGTYVLVEFVGDIPDESDEDAEDEVATPEPSYVPPESSGTSDYSDSEDSVDDVPLNIRKRLRGNWYVSPNLYKNLHEQPTNACGTVKKNLKGMPTLEKVLEREETQYKSTTKLLTLKWKDKREVTMLTTMRDSEVVGTGKIDKQTGNEKKKPLCILYYNANMGAVDRSDMMLSSTECVRRTVKWYKKVFFHLLDISILNAHALHLTATGKKISLEAFQLKVVDQILEKYHRPIYVCQTGRRSCEEDNPLHLTARHLPI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -