Smel083420.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- clz9
- Assembly
- GCA_963583905.1
- Location
- OY757318.1:86601458-86603566[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-07 3.5e-05 25.7 0.1 2 38 16 52 15 57 0.90 2 2 5.3 1.1e+03 1.7 0.0 22 36 150 164 148 168 0.85
Sequence Information
- Coding Sequence
- ATGGTTAGAACTTACAAGAGAACGACTGATCGGGCTAATTTAGATGAAAATGCCATGTCCTCTGCAATTAAGGCCGTTCTTGAGGAAAACTTTTCCATAAGAAAAGCAGCCGACAAATACAATTTGAAAGCTGCTACATTGCAGCACAGACttgaaaaacaaaagaaacaagTTCCAAAAAGAGATTACGTGTCAAAATATTGTTCCCAACAAGTCCTGACAGTTGAACAAGAAAGACAAATGAATGAATATGTCGTTAAGTGCAGCAATATGCATTATGGGCTTACTTTGCATCAATTAAGAAGTCTTGCTTATGAATACGCTAAGAAACTAAACTGCAAATATCCTCCTAAATGGGATGAAACAAAACAGGCAGGAATGGACTGGGTTTCGGGGTTTCGAAAACAAAATCGAAATATTAGTTTAAGAAAACCCGAGAAGACCAGTCTTGCTAGATCGTTCGGAATCAGTAAAACATCGGTTcatgaattttatttaaattatgagAAAGTTCTTACCAAACACACATTTACACCTGATCGTATAATAAATTTTGACGAAACAGGAGTTGCCACTGTAATGAATACACCTAAGGTATTGGCAGCAAAAAAACAGAAGCAAGTTGGCCAAATTGTTTCGGGGGAAAGAGGAGAGCTTGTCACTGTATGTGGTATAATATCAGCAACAGGGAATACCATACCTCCCATTTTTATTTTCCCTCGAGTGCATTATAAAGACCACTTCTTGAATGGTGCTCCAGAGGGAAGTTTGGGAGCTGCAACCAGAAGTGGATGGATGAACTGTGATATTTATATGGATGCACTGAAACATATTCAAAGACACACCTGCAGCTCAAAGGAAAATCCAGTTTTGCTCCTGTGTGACAATCACGAATCGCATATTTCAATTAAAGCCGTCGATTACTGCCGAGAAAATGGAATCGTCTATCTTTCTTTCCCACCACATACTTCCCACAAATTACAACCTTTGGATGTGGGAGTATTCGGCCCTTTCAAAAGCAAACTGAAGGTTGCCTTTAATGATTGGCATACTAATCATCCAGGAAaagctttgtcaatttatgatatACCGGCACTCGTAAAACTGGCCTACTTCGAAGCATTCACTGTAAAAAATATTACTAGCGGCTTTGCAACACCTGGTTTTCATCCTCTAAATAAGCTAGCCTTCTCTGATGAAGATTTTGCTTCGTGTAATGTTTATACATCTAATGCGCCACCGGCAATTCAAAATAATATACCAGGCCCTCCATGTGATTCAACGTCATCCTTATTTACTCAATCAGAATCAAGCCCACTATCAAATTTTCTGTCACGAGAAAACACCACACCTATACCACAACAAACCCCCACCATCGTAGAAATTTTGTCTCCAGAACCTGGACCGTCAACTTCTTCGACCTCGCTATTTACACCAGAATCTATAAGACCATACCCACAATTATCTGAAAGAGTAGTGAAACGGAAAGGGAGAGAACTTGGAAAATCACGAATTTATACATCCACGCCAGAAAAGAACCGACTTCAAGAATTACACAACATCAAAGAACAGAAACGGATCATGAAAGAACGAAGACAGCGTGCGAGAGAATTAAAAACTGCAAGGAATATCGTCGCTCTGGCTGATAACTGTCATGAACCAATGAAAAGAATGAGTAGTAAAAGAAAAAAGATTGAAAGTGATTCTGATTCGACAAGTTCCTCAGAAGACTTCGAAACTATGGATTCTTCCTCGGATTTTGCAGAGTCATCAAATGATGAGAATACGTTTGATCAGGTCCAACCCCTACCAGAAGAAATACAAGATGGTGACTTTctactaataaaatttgaaaaaaaaaagaaatctgttTTGCATTATGTTGGCAAGGTGATTACTAAGTATGAAAACTCGGAATACTATGTCTCCTATCTGAGAAAGAAGCCAGGCTTATGGACTTTTGTCTTTCCTGATATGAAAGATGAAGCGTCAGTTAATCATtctgatattgttttaaaattgccGATGCCTAATTTCACAAAAGGAACCAGTCGAACTGCTTCTCTGTTTACGTTTCCTATTAATCTCTGTTCTTACAATGTGCAATAA
- Protein Sequence
- MVRTYKRTTDRANLDENAMSSAIKAVLEENFSIRKAADKYNLKAATLQHRLEKQKKQVPKRDYVSKYCSQQVLTVEQERQMNEYVVKCSNMHYGLTLHQLRSLAYEYAKKLNCKYPPKWDETKQAGMDWVSGFRKQNRNISLRKPEKTSLARSFGISKTSVHEFYLNYEKVLTKHTFTPDRIINFDETGVATVMNTPKVLAAKKQKQVGQIVSGERGELVTVCGIISATGNTIPPIFIFPRVHYKDHFLNGAPEGSLGAATRSGWMNCDIYMDALKHIQRHTCSSKENPVLLLCDNHESHISIKAVDYCRENGIVYLSFPPHTSHKLQPLDVGVFGPFKSKLKVAFNDWHTNHPGKALSIYDIPALVKLAYFEAFTVKNITSGFATPGFHPLNKLAFSDEDFASCNVYTSNAPPAIQNNIPGPPCDSTSSLFTQSESSPLSNFLSRENTTPIPQQTPTIVEILSPEPGPSTSSTSLFTPESIRPYPQLSERVVKRKGRELGKSRIYTSTPEKNRLQELHNIKEQKRIMKERRQRARELKTARNIVALADNCHEPMKRMSSKRKKIESDSDSTSSSEDFETMDSSSDFAESSNDENTFDQVQPLPEEIQDGDFLLIKFEKKKKSVLHYVGKVITKYENSEYYVSYLRKKPGLWTFVFPDMKDEASVNHSDIVLKLPMPNFTKGTSRTASLFTFPINLCSYNVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -