Smel061491.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757315.1:83158997-83160506[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-08 1.9e-05 26.5 0.1 5 39 1 35 1 40 0.90 2 2 9.4 2e+03 0.9 0.0 18 28 78 88 63 89 0.77
Sequence Information
- Coding Sequence
- ATGACAAATGCTTTATCAGACGTCCGAAGCGGAATGTCATATAGAGCTGCGTCTATGAAACATGGCATTCCCCGAATAACCCTTATGCGGAAACATAAAAGAAATTTACCCGCTAAAACTAAAATGGGTCCTACAACAGCATTTAGTGAAGAGCAAGAAAACATGTTAGTTTACTGGATCATTACTATGTCAAAAGCAGGTTTTCCTGTTTCTAAAGAAACGCTCATGTATAGCGTTAAAAAACTTGCAACTGAATATAACATTAAATTTGGCGGGAAAACAACTCCTGGTCGAAAATGGTATAATTTATTTTGTGCAAGGCATCCAAATATTTCCCTAAGAACAAGTCAAAATTTAACTACAAGTAGACGTTTAGTATCAGAGGAAGATATATCAAACTGGTTTCAGGAAGTAAAAAATTACATGGATCAAAATAAACTAACAAGTATTTTGGACGACCCAAAGCGAGTTTTTAATACAGACGAGACTGCCTTCTTTTTAAATCCTAAACTAGGCAAAGTATTAGCCCAGAAAGGCAGTAAAAATATCTATACCTCAGCAGGAGCTGATGAGAAGGAAAATATTACAGTACTGCTCACTGCTAATGCGGCTGGTCAATTAGCACCACCTATGATAGTTTATCGTTTTGTTAGAATACCGCAAAACATTGCAGCTGCAATCCCTAGTAAATGGGCTATAGGTAAATCCGAAAATGGGTGGATGACCCAGGAAATATTTTTCGAACATATATGCAATATTTTCTTGCCATGGAATTGGTTGCACTCTACCCTAATGCGACGCACGTCCTACAGCCAGCCTATGGATGTTGCGGTTTTTCATACCATGAAAACTATATGGCGACAACAAGTGCAAGATTTTAGGATGCAAAATGAAGGAAAACAGGTGGACAAAGTAGAGTTTCCAAAAGTATTAAGAGATGTTTTACCTTATGTCACaccaaaaataatagaaaatggctttaagaaatgtggattggtTCCTTGGGATCCCACACAAGTTAAGCTTCCATCACCATCCAATAACACTTCGAAGAATAATAATGTGCCAAATAATTTGGAAATGGAAATGTTCCTTAAATTATTAGAAAGACAAATTGGGGAAGAGAAAATTAAGGCATTTAAAGAAACTAATGAAAATTGGGAAAGTGCAATACAAGATAAATCACTGTATGAACTGTGGGAAAAAGCTAACATGAAAGTAAATTCTGAAAAAATCAGTAACGAGATGGCAGAGTCATCGCAAAAAAATAACACAGAGACATCTCCACAAAGTCATAATTCTGATGAATTAAGCAAGCAGCTTACACCGGTGAAGCAGATTTATCAAAATGTAGAGCCACCAAATCTTCCATCCACCTCAACGGGAATAACAGAATCTGTTTTTTGA
- Protein Sequence
- MTNALSDVRSGMSYRAASMKHGIPRITLMRKHKRNLPAKTKMGPTTAFSEEQENMLVYWIITMSKAGFPVSKETLMYSVKKLATEYNIKFGGKTTPGRKWYNLFCARHPNISLRTSQNLTTSRRLVSEEDISNWFQEVKNYMDQNKLTSILDDPKRVFNTDETAFFLNPKLGKVLAQKGSKNIYTSAGADEKENITVLLTANAAGQLAPPMIVYRFVRIPQNIAAAIPSKWAIGKSENGWMTQEIFFEHICNIFLPWNWLHSTLMRRTSYSQPMDVAVFHTMKTIWRQQVQDFRMQNEGKQVDKVEFPKVLRDVLPYVTPKIIENGFKKCGLVPWDPTQVKLPSPSNNTSKNNNVPNNLEMEMFLKLLERQIGEEKIKAFKETNENWESAIQDKSLYELWEKANMKVNSEKISNEMAESSQKNNTETSPQSHNSDELSKQLTPVKQIYQNVEPPNLPSTSTGITESVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -