Smel073618.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757317.1:30492548-30496171[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-08 2.1e-06 29.6 0.0 3 38 49 84 47 90 0.92
Sequence Information
- Coding Sequence
- ATGAGATGCTCGTCTACAGAAGATATGATGAGGAAGACCAAACTGCTCTTCATTTATGTCACTGGGAAGCTCTCAGAGCAAGAAGACGccGAAAATATGCCGCGCCCAAAACCCAAAAATCCGGGAATTGGAAAAACGTCTTCCGAAGCTATGAGAAAAGCCATATATGATGTTATAGAATGTGGATTATCACAAAAAACTGCTGCTTTAAGGTACGATATTCCCCGTACTACTCTCAGAAGATATCTAAAAAAATGTCAGGATAAAAAAGACGATATAGACTGGCGCTCTGATCTTCTAGAAGGAGCACCACGACTGACTCCTAATTATTCTGTCAAGCTAATTTTCTCTAAAGAAGAAGAACAGCAACTTAGCATTTACCTACAAACAATGACAAGATTGCACCATGGTCTAAATCCAAAAAGTGCACGAAAGCTAGCATTTGACTTGGCGGTCGCGAATAATAAGATAATACCCTTATCATGGAGAGAAAACCAGACTGCAGGGAAAGCCTGGTTTACAGGATTTCTTAAACGCAATAAAGAATTATCATTACGAACTGCAGAAGCAACATCACTTGGTAGAGCAATGGGTTTCAATAAACCTGTTGTTGAAAGTTTTTTTAAGAACCTCAAACAAATTTATGAGCGGTACAAACTAACACCAAGTCAAATTTATAACGTTCACGAAACAGCACTAACTACTGTCCAAGGAGTTGGAAAGGTAATAGCTAAAAAAGGACAGCGGCAAGTAGGTAGCATAGTTTCCAATGAAAGGGGAACTCTAATAACTATGTGCGCTGCAATAAATGCCATAGGAAACTTTGTACCGCCATTTTTAATATTTCCCAGGAAGTATTTTAAGGACCATATGATCAAAAATGCACCTCCAGGAACTAAAGGCGTTGCATCACCTAGTGGATGGATCACGGCCGAGTTATTTATACAGTGGATGAAACATTTTATACAACATGCAAATCCAACACAGCTGTTTCCTGTTTTGCTTATCATGGACAACCATGAAACTCACGTTTCATTGGAAACTATCAAAATGGCCAAGAAAAACTACATAATATTGCTAACACTACCGCCCCACACAAGTCATCGGCTTCAGCCACTCGATAAAGGTGTATATGGCCCTCTAAAGAAATACTATAACCACGAATGCAATACGTGGTTATTGAGAAATCCTGGGAAAAGGATAACAATATATGATATAGCCGATATCTTGCACGTTGCATATCCACTTGCCTTCTGTCCAAACAACTCAATATCGGGGTTTAAAGCTACTGGGATTTCCCCATATAATGATCAAATTTTTGGTGAAGCTGATTTTATGGCTGCAACGGTAACTGACGTTTGGCCCGTACAGGAAGTAGAAAGTAAACAAAATTCTGAATGTAATAATAACATCCAAGCAGCCTCATCATTTCATGATGAAATACGGGATCGCAATGATAACGTGGCATCAACATCATTCCATCGCGACAAGACAcccgaaagacaatttatttcGCCAGAAGCATTAAAGCCCTACCCTAAGGCTAGGCCAACCTCCTCGGGAAAACAAGGGAAGCGCAAAAAGAAAACCACAGAAATTTTAACTAACACACCCGTCTACAAAAATATTGAGGAAGAAACTGCGAAAAGAATGGTGAGGCAAGCTGTGGTTAAGAAACAGAAAAGTgtgaaaagaaaaatttcaaacgtTAGTGATGAAAAAGCAAAAActacaaaaaagaagaaaaacaaaGAGTCTAGCGACGAAAGTTGTAGTAGTATTGAAATGTCTGACGTTACTGATTCTGATGACATTGACATATTTTCTAATTCTGACAAAATGAGTGACGAAGACATAGACGCTCAAATAATTGATGTGAACTCCTTTGTCCTTATAAGATTTGATACAAAAAAGACTTCTAAATTTTACGTTGGAAAGGTCACTGAAATTCTTACAGGAGATGACGACTATTCTATAAGCTTTTTACGACGACAAggaaagaatttttcatatccaAATTTTCCAGATTGTGCCACAGTAGAAAAAAAAGATGTAGTTCTCCACTTACCTCAACCTAACAATGCAGGTGGTACTAATAGAACTGCAAACTTATTTAGTTTTCCGATAGATTTGTCTTCTTACaatgtttgttaa
- Protein Sequence
- MRCSSTEDMMRKTKLLFIYVTGKLSEQEDAENMPRPKPKNPGIGKTSSEAMRKAIYDVIECGLSQKTAALRYDIPRTTLRRYLKKCQDKKDDIDWRSDLLEGAPRLTPNYSVKLIFSKEEEQQLSIYLQTMTRLHHGLNPKSARKLAFDLAVANNKIIPLSWRENQTAGKAWFTGFLKRNKELSLRTAEATSLGRAMGFNKPVVESFFKNLKQIYERYKLTPSQIYNVHETALTTVQGVGKVIAKKGQRQVGSIVSNERGTLITMCAAINAIGNFVPPFLIFPRKYFKDHMIKNAPPGTKGVASPSGWITAELFIQWMKHFIQHANPTQLFPVLLIMDNHETHVSLETIKMAKKNYIILLTLPPHTSHRLQPLDKGVYGPLKKYYNHECNTWLLRNPGKRITIYDIADILHVAYPLAFCPNNSISGFKATGISPYNDQIFGEADFMAATVTDVWPVQEVESKQNSECNNNIQAASSFHDEIRDRNDNVASTSFHRDKTPERQFISPEALKPYPKARPTSSGKQGKRKKKTTEILTNTPVYKNIEEETAKRMVRQAVVKKQKSVKRKISNVSDEKAKTTKKKKNKESSDESCSSIEMSDVTDSDDIDIFSNSDKMSDEDIDAQIIDVNSFVLIRFDTKKTSKFYVGKVTEILTGDDDYSISFLRRQGKNFSYPNFPDCATVEKKDVVLHLPQPNNAGGTNRTANLFSFPIDLSSYNVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01369147; iTF_01369148; iTF_01369149;
- 90% Identity
- iTF_01369147; iTF_01369148; iTF_01369149;
- 80% Identity
- -