Smel062572.2
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757315.1:88298929-88299372[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-09 5.3e-07 31.5 0.0 2 41 6 45 5 47 0.95 2 2 4 8.4e+02 2.0 0.0 27 43 104 121 102 123 0.90
Sequence Information
- Coding Sequence
- atgtttcaatacaacgaggataatttaaaaaatgcgttATTCGAAATCagagaaaataaaatgaaaataagagaAGCAAGTAGACGCTTTAATGTTCcaaaaacaacaataattaatcgACTTTCTGGAAGAGTACCAGATACTTTAAGAAAGCCTGGACCGCCTCCCTTGTTAACAGTAGAAGGAGAAGACAGAAACAAAAATTGGGTAATAAACCTTGCAAAGTGTGGGTTTCCTGTAAAAAAAGAGATGTTGATAGATACGGTGCGTAAAATAGCAGCAGACACTAatccaaacttatttaaaaatggtGTACCACAACAAACAtggtatttgaattttttaagaagAAATCCGGAAATAAGTCTTAGAGAAGCGGAGGGTATCAATAAAGCAAGAGACATAGTGACGGAGGAATATATTAGAAAATGGTTTGAGGAATGA
- Protein Sequence
- MFQYNEDNLKNALFEIRENKMKIREASRRFNVPKTTIINRLSGRVPDTLRKPGPPPLLTVEGEDRNKNWVINLAKCGFPVKKEMLIDTVRKIAADTNPNLFKNGVPQQTWYLNFLRRNPEISLREAEGINKARDIVTEEYIRKWFEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -