Basic Information

Gene Symbol
-
Assembly
GCA_963583905.1
Location
OY757310.1:106174878-106177451[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.1e-11 1.5e-08 36.5 0.1 1 37 24 60 24 68 0.85

Sequence Information

Coding Sequence
ATgccgaaaaaaaatataaaaattcaaaaacagcCTTTCAAGGGTAAAACAAGAAGATTTCACAAATATTCTAACGATGCAATCCAAGCAGCTCTACGCGCTATTCGAGAATCTGGAATTAGTATTAGAGAGGCTAGCGCGCGCTTTGGGATACCCAGGACTACAATTCACGACAAATTTTCCGGAAAATCTCCAGCATTGAGAAAGAAAACCGGACCACCACCCATACTAACGGTAGAGGGAGAAAAGAAAATTGCAGACTGGGCTATCAGTATAGCAAAATGCGGCTTCCCAATTACGAAGTCTGAACTACTAGAAGCTGTTATAAAAATTGCTACTAATATTGGTAAAATAAGCTCATTTCCAAACGGCGGTCCTGGTATTAGGTGGTATAAGGGATTCTTGAAACGTCATCCAGAAATTTCCCAAAGGGAAGCTGAAGGGATAAATAAAGCTCGGGCATTGGTCACAGAAGAGTTAATTCGATCCTGGTTTGaagacttaaaaaaatatttaaaggaaaataattttgaggatgTTTTCAAAGACCCCACCATAATCTTTAATGCGGACGAATCTGGATTTTCCCTATGTCCTAAAACAGGAAAAGTGCTGGGACCAAAGGGGTGGAAGAATCTATACATAATTAAATCAGGcaaggaaaaagaaaatataaccgTCCTTATTTTGTTCAGCGCTTCAGGAAAAATTGGTCCCCCTTTGGTGGTTTTTCCCTATGTAAGACCACCTCTAGCTCTAGCTGAAAATGTTCCTGATAACTGGGTTATCGGAAAATCCGACTCCGGCTGGATGAAGGGTGATGTGTTCTTCGAGTATATAGCGAACGAATTCAACTCCTGGCTTCTCGAAAATGAAGTAAAGCGTCCCATCATATTACTTATAGATGGTCATAAGTCGCACATGACGTTGCCTTTGAGTGAGTTCTGCGAACAGAATGGGATTATTTTATACGCCTTACCCCCTAATACTACTCACATCCTTCAGCCGGCGGATGTTAGTGTATTTAAGCCCATGAAACAAGAGTGGAAGAACACCGTCAAAGATTGGCAGAAACGGCCAGAAAATATTAACatcataacaaaaattaatttttgtaaggtTTTCGAAGAAACATTACAAAATACTCAAATGGATAACCATATTATAAAGGGCTTTCGCAAATGCGGCCTATATCCCCTAGACCCAAATGCTGTAGATTACACGAAATGTGTAAAAAATTTTCTTGAGAAACAACACCAGAATTATGTTTCTTGTGAGTCGGAACAACCTTTAACAACAACAGATTTTGATTCTGCGCAAAGGGTAATCGAGAAAATTAGTGATAAATTGGAAAAGTATGGGATAAGCTTCAACGTTGTTATCAACGAAATTAACTTCGAGAGAAAATCATTGGTAATAGACTCCGATGAAATGCAGCATTCTACTTCCAATACTTCAACTACTGcatctgtacaattaaattccGAAATTGCATTAAATGTTGAAGTGGGGAGTATCGTACCAGTGACATCTTTGACTTTATTGCCTATTGACATTATTGAAATAAGAGAGAATTCACTATCAGAAAACTGCGAAGCAATTTCTAGGCCGGAGGTCGGGGAGCCAGGAATGGAATTCCTGACCAATTCTGACATGGAAATAATAGTCCAAAACGAAAATGATGCAACTGTAGATAAAGAAGACATAGAAATAAGCAAAGTgacaaatgaaattaataaagaaaaaacagctGAGACTACAGAATACTGTGAGCAGATTGAAGTtgaaacttttactaaaaaacGAGCTGAAAACGTAAAAGAAAAAATACGAATTGGGTATGCAGAAGAAATGAATTTTAATAACTCAGAAGTAAACAGCCGTATTGAAATAAAAAGTGGAAATGAATGTAACGAGAAAACAGCCGAAGAAGAAGAAACATTTTGTGGAATAACGAGAAATGAGATTGGTAATAGTTCAGCTCTAGTAGATAAGACTCGAGGCAATGAAAATGTGGTATTAAATGATAAAATGGATGATACCGGAAATGAGGGTAATAGTTCAGCTCTAGTGGATGAGAGTCAAGGCaatgaaaatgtaatattaaatGATAAAATGGATGATATGGGAAATGGGGGTAATAGTTCAGCTCTAGTGGATGAGAGTCAAGGCaatgaaaatgtaatattaaatGATAAAATGGATGATACGGGAAATAGGGGTAACAGTTCAGCTTTAGTAGATGAGAGTCAAGACaatgaaaatgtaatattaaatGATAAAATGGATGATATAGGAAATGGAGGTACTATTAAGATATTAACAGAGACAAATAAGAACATAGGAAATGAGCTGCTTACTAATGTTGCTATAGATCAAAACAAAGAAGATCAGGATGGAACTAATTCTaatgaaattaaagaaaatatgactCCCAATAATGATAGTTTAGATCCATTTCAAAGACACCTGATATATCCAGAAGAATCTTTGAAGAAAAAGACCAACGGTGCTCCCAAAGAAAAACTACCCAGTGCAATATCCTCAGAAGCATGGAGAACGTATTACACttga
Protein Sequence
MPKKNIKIQKQPFKGKTRRFHKYSNDAIQAALRAIRESGISIREASARFGIPRTTIHDKFSGKSPALRKKTGPPPILTVEGEKKIADWAISIAKCGFPITKSELLEAVIKIATNIGKISSFPNGGPGIRWYKGFLKRHPEISQREAEGINKARALVTEELIRSWFEDLKKYLKENNFEDVFKDPTIIFNADESGFSLCPKTGKVLGPKGWKNLYIIKSGKEKENITVLILFSASGKIGPPLVVFPYVRPPLALAENVPDNWVIGKSDSGWMKGDVFFEYIANEFNSWLLENEVKRPIILLIDGHKSHMTLPLSEFCEQNGIILYALPPNTTHILQPADVSVFKPMKQEWKNTVKDWQKRPENINIITKINFCKVFEETLQNTQMDNHIIKGFRKCGLYPLDPNAVDYTKCVKNFLEKQHQNYVSCESEQPLTTTDFDSAQRVIEKISDKLEKYGISFNVVINEINFERKSLVIDSDEMQHSTSNTSTTASVQLNSEIALNVEVGSIVPVTSLTLLPIDIIEIRENSLSENCEAISRPEVGEPGMEFLTNSDMEIIVQNENDATVDKEDIEISKVTNEINKEKTAETTEYCEQIEVETFTKKRAENVKEKIRIGYAEEMNFNNSEVNSRIEIKSGNECNEKTAEEEETFCGITRNEIGNSSALVDKTRGNENVVLNDKMDDTGNEGNSSALVDESQGNENVILNDKMDDMGNGGNSSALVDESQGNENVILNDKMDDTGNRGNSSALVDESQDNENVILNDKMDDIGNGGTIKILTETNKNIGNELLTNVAIDQNKEDQDGTNSNEIKENMTPNNDSLDPFQRHLIYPEESLKKKTNGAPKEKLPSAISSEAWRTYYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01369025;
80% Identity
-