Smel012308.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757309.1:196716885-196717463[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.6e-11 1.2e-08 36.8 0.0 2 40 19 57 18 61 0.93
Sequence Information
- Coding Sequence
- atgccCCGAAAACACAAACGTTTGCTAGGATCTAGATCCTACCGAAATTACTCCAAGGAAAAATTGGAAGAAGCACTGGGAAAGGTGGTTGGTGGTACACTTTCCATTCGCGAGGCGACAAGACAATTTAGTATTCCATTTGGAACCTTGTATAATCGATATAAAGGAATCCATGGTAAGAATCCGGGTCATCCCACAATTTTCACCCATGACGAGGAGGTGGCCATTCTTAAATCGGGAGCCAAATGCGCGGATTGGGGATTCCCCTTATCGCTAATGGATATTAGAATGATGGCCAAATATTATTTAGATAGAAGAGGAAGAACAGTGCATTTATTTAAGATTAATCTTCCTGGAATAGACTGGACATACAGTCTTCTTCAGCGACATAAAAAATCTTACGGACAGCGCATATCTACAAACATTAAAAGGGCTAGAGCATCGGTGTCGAGGGCCACTCTGGGAGAATTTTATGACAACTTAGAAAATACAACTACGTCGAGTCTAATTTGTCCGATGATCCCGGAAAGAAGCGTGGCATTTATAGACGAAGCGTCAAATACCCAGAAAAAGTTATGA
- Protein Sequence
- MPRKHKRLLGSRSYRNYSKEKLEEALGKVVGGTLSIREATRQFSIPFGTLYNRYKGIHGKNPGHPTIFTHDEEVAILKSGAKCADWGFPLSLMDIRMMAKYYLDRRGRTVHLFKINLPGIDWTYSLLQRHKKSYGQRISTNIKRARASVSRATLGEFYDNLENTTTSSLICPMIPERSVAFIDEASNTQKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00755399; iTF_01369050; iTF_01295897;
- 90% Identity
- iTF_00755399;
- 80% Identity
- -