Smel061211.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757315.1:81597426-81598069[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-10 1.3e-07 33.4 0.1 1 39 28 66 28 71 0.91 2 2 2.2 4.6e+02 2.9 0.0 18 28 109 119 93 121 0.81
Sequence Information
- Coding Sequence
- ATGGTGGACATACCATGTCCACAATGGGGACATACCATGTCCACTATGGGTATGGTTaaggttaaaaaaattctaaaatactCAGAAGAAAGCATGACAAATGCTTTATCAGACGTCCGAAGCGGAATGTCATATAGAGCTGCGTCTATGAAACATGGCATTCCCCGAATAACCCTTATGCGGAAGCATAAGAGAAATTTACCCGCTAAAACTAAAATGGGTCCTACAACAGCATTTAGTGAAGAGCAAGAAAACATGTTAGTTTACTGGATCATTACTATGTCAAAAGCAGGTTTTCCTGTTTCTAAAGAAACGCTCATGTATAGCGTTAAAAAACTTGCAactaaatataacattaaatttGGCGGGAAAACAACTCCTGGTCGAAAATGGTATAATTTATTTTGTGCAAGGCATCCAAATATTTCCCTAAGAACAAGTCAAAATTTAACTACAAGTAGACGTTTAGTATCAGAGGAAGATATATCAAACTGGTTTCAGGAAGTAAAAAATTACATGGATCAAAATAAACTGACAAGTATTTTGGACGACTCAAAGCGAGTTTTTAATAGACTAGACTGCCTTCTTTTTAAATCCTAA
- Protein Sequence
- MVDIPCPQWGHTMSTMGMVKVKKILKYSEESMTNALSDVRSGMSYRAASMKHGIPRITLMRKHKRNLPAKTKMGPTTAFSEEQENMLVYWIITMSKAGFPVSKETLMYSVKKLATKYNIKFGGKTTPGRKWYNLFCARHPNISLRTSQNLTTSRRLVSEEDISNWFQEVKNYMDQNKLTSILDDSKRVFNRLDCLLFKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -