Smel054523.2
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- CanB2
- Assembly
- GCA_963583905.1
- Location
- OY757314.1:122317265-122321246[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-11 6.5e-09 37.6 0.0 3 43 17 57 15 59 0.93
Sequence Information
- Coding Sequence
- ATGGTTAGAAATTACCAAAGAAAAACGAAAAGAGCCCCCTATTCTTCTGAGGACTTACAAACGGCTGTGGAATACGTAAGGAGTGGAAAATGTGGCACATTGCGTGCTAGCAAAATATTTAACATCCCCAGAAGCACTCTAAAGGATCACATAAAAGGTCGTAGGGGTGTAAAGAGTGACACAATGGGAAGGCCTACAGCTCTACCAACCAAAGATGAGGAAGTCCTTGCTAATGGAATTAAATGCCTCGAAAAATGGGGTTTTGGACTCAGCCGTAAAGAAATCCTAGAAATCGTGGGCAAGTATGTTACACAAAAGCAGCTTAAAACTCCATTTAAGGACAACGTACCTGGAgaggattggtttttaaaattcaaacaaaGGCATCACTTGTCAATTAAAAAACCAGAACCATTGGAATATGCAAGAAAGAAGAACACGGATCCATTTATAATATATCCATATTTTGAGTTATTGAAAAACACAATACAGAATTTAAATCTAGAAGACAAACCAGGCAATATTTGGAACATGGACGAAACTAGTTTTTGCAGTGATCCTTCAAAAACGAAGGTCGTTGGAGAAAGAGGACATGCATCTACTCGAATTGTATCTGGCCCAGGAAGAACAAACACCAGCGTCTTGTTTGCCGCTGCTGCGGATGGACAAAAGGCACCACCGTTAATTATTTATAAAGGGAAAAGTGTCTGGGATAGCTGGATAccaaaacaaaacaatgaatatcCTGGTACGACATATGCTGCTACAGAAAATGGATGGATGGAATCCCAAgtgtttaaaaactattttttgaaaacattcaTACCCCACTTGAGGGGGAATGGTCCTGTGTTAATTGTATATGATGGTCATACCACTCACATCGACATAGATGTAATAAATGCGGCTGTGGCAGCCAATATTACCATCATAAAGTTACCGCCACACAGTAGCCATCTTCTCCAACCACTTGATTTAGCCGTTTTTAAATCTATTAAGGTGGCTTGGGATGCATCACTTGTAAAATGGCAACGTAACCATTTGGGACAGAAATTACCCAAAGAGAAGTTAGCTGAAATGGTAGGAAATGTCTGGAAAGATGCAGAtccaaaaattatttgtgaaGGGTTTAAGAAAGCTGGTATTTACCCTTACAACTGTGATGTTATACCAAAGGAAAAATATGAGTTACAACAGTTGAAAAGGTGGGAAGCTCAGCAGACGATGGAAAACCCTGGAAATCTAACACCAATTCTTACTAATGTACCTACAAGCGATGAACATATGAAACTGCCAATTCAAATCGAGGAAAACGTGCAACTAGAGAAAGAGGGGGAAATATTACTTGAAGACATTGAAATGACAGCAAGCGCAGGTCAAGAAGAAGATATACCAGTTGAAAGAGAAGAAAGTCAGGAAGGAAATACAACAGGTGAAATAGAAAGGGAAATTGATGTTATACCAGGTCAAGTGAATGAAAGAGAAGAATCAATTGAAATAGAGGATATTTCAGTTCAAACAGGTGATGCACTAATTGAAGTGGAGAGAAATTCCAGTACCTTAACTGTACCAATTGAGATAGAAGGACGACATACTTTTGAAGAACTCTTACTAAGTATGGTAAAAGGAAATCAAACTAATAATGTACCAAAAAAGTCCAGAAAGAGAGTCTGTCCTGGGGCTGAATTAATAACAAGCGATGAAGTAAGGAAAATACTGCAAGAAGTTAAAGACATGGAAgcgaaaaaaaagttaaatgccaaaaaaaagaaaactgaaaAGACGACTACTAAAGAACTGAAGactaagaaagaaaagaaaatggcCAGAAAAAAGAAAACCAGTGAAGTAAAACGCAAGAAAATAAATTTGCAATACGATTCAGAAGACACAGATGAAGAAGATGTAGATTTGCATTTAGTTGACGAAGAAAGCGATTTTGAAACGCTTTCTGAAATGGGTGTAGAGGAACTGGATACACTTAATTTCGGAAGAAATGTGAGTGAAAGACAAATAGGAGACTGGGTATTAACAAGGCTGCATTCGGAGAGAAAGACTTCTCAGTATTTTATAGGAAAAATAGAAAATGTAGACCTGGAAACTGGAAAtcctattgtaaaatttttgcgaAGAATAAAATCGAAGACAATAAATTCCAGATCAGCCTTCACATGGCCTAATGTGGAGGATATTTCAGAAGTTTTGCCCATGGATATCATTTGTATTTTACCTTCTCCTACCATGGGAAGAAGAGGTGAAATTAAGTTTGAAGTCAGTTTTTCCAACTATAATGGTAACGAGAGTTCCCTACCCATGGAGCTGTGCTCAAATTTTGATGCTGATGAAATACGGCGTCTCGGGAAGAGATTCCGAAAGCTAGATTTGGATAACTCAGGGGCACTTAGCATCGACGAGTTTATGTCTTTACCTGAATTACAGCAGAACCCGTTGGTGCAACGAGTTATTGATATTTTCGATGCCGATGGGAATGGGGAAGTTGATTTCAAAGGTATTGTTGTACTTGCATGA
- Protein Sequence
- MVRNYQRKTKRAPYSSEDLQTAVEYVRSGKCGTLRASKIFNIPRSTLKDHIKGRRGVKSDTMGRPTALPTKDEEVLANGIKCLEKWGFGLSRKEILEIVGKYVTQKQLKTPFKDNVPGEDWFLKFKQRHHLSIKKPEPLEYARKKNTDPFIIYPYFELLKNTIQNLNLEDKPGNIWNMDETSFCSDPSKTKVVGERGHASTRIVSGPGRTNTSVLFAAAADGQKAPPLIIYKGKSVWDSWIPKQNNEYPGTTYAATENGWMESQVFKNYFLKTFIPHLRGNGPVLIVYDGHTTHIDIDVINAAVAANITIIKLPPHSSHLLQPLDLAVFKSIKVAWDASLVKWQRNHLGQKLPKEKLAEMVGNVWKDADPKIICEGFKKAGIYPYNCDVIPKEKYELQQLKRWEAQQTMENPGNLTPILTNVPTSDEHMKLPIQIEENVQLEKEGEILLEDIEMTASAGQEEDIPVEREESQEGNTTGEIEREIDVIPGQVNEREESIEIEDISVQTGDALIEVERNSSTLTVPIEIEGRHTFEELLLSMVKGNQTNNVPKKSRKRVCPGAELITSDEVRKILQEVKDMEAKKKLNAKKKKTEKTTTKELKTKKEKKMARKKKTSEVKRKKINLQYDSEDTDEEDVDLHLVDEESDFETLSEMGVEELDTLNFGRNVSERQIGDWVLTRLHSERKTSQYFIGKIENVDLETGNPIVKFLRRIKSKTINSRSAFTWPNVEDISEVLPMDIICILPSPTMGRRGEIKFEVSFSNYNGNESSLPMELCSNFDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDADGNGEVDFKGIVVLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01368988;
- 90% Identity
- iTF_01368983;
- 80% Identity
- -