Sbip003029.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- -
- Assembly
- GCA_944452705.1
- Location
- CALYCB010000052.1:747609-753198[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.12 17 7.3 5.2 2 22 177 197 176 197 0.95 2 17 4.9 6.9e+02 2.3 1.5 1 23 295 317 295 317 0.80 3 17 0.1 14 7.6 0.7 2 23 450 471 449 471 0.96 4 17 0.052 7.3 8.5 0.6 2 23 545 566 544 566 0.96 5 17 0.17 24 6.9 1.8 1 23 574 596 574 596 0.97 6 17 0.064 9 8.2 3.5 1 23 630 652 630 652 0.95 7 17 0.00018 0.025 16.3 4.0 1 23 660 682 660 682 0.99 8 17 8.4 1.2e+03 1.6 3.1 1 23 727 749 727 749 0.95 9 17 0.018 2.6 10.0 2.2 1 23 761 783 761 783 0.98 10 17 0.085 12 7.8 1.8 1 19 834 852 834 856 0.94 11 17 1.9 2.6e+02 3.6 1.1 1 23 862 884 862 884 0.96 12 17 0.0017 0.23 13.2 1.1 1 23 943 965 943 965 0.95 13 17 0.0073 1 11.2 1.9 1 23 971 993 971 993 0.96 14 17 0.005 0.7 11.7 2.6 1 23 1079 1101 1079 1101 0.97 15 17 0.00013 0.018 16.8 1.4 1 23 1107 1129 1107 1129 0.99 16 17 0.25 36 6.4 1.6 1 23 1220 1242 1220 1242 0.96 17 17 0.00091 0.13 14.1 2.6 1 23 1254 1276 1254 1276 0.98
Sequence Information
- Coding Sequence
- ATGCAGTTTGTGGAGAAAGAAATGGTCAACAGCGATTCCAACGACGAAGGAGCCTCTTTAGAGATGAAAATCTCAAAGTTCTCTCCTACGAGGGAATCAAACTCACACAGTAGCGTAGATGATGAGAAATGTAATAAAAATAGTAAAAAGCCGCCGCGAAAACCAATACCGCAACTTATTCCATTGAACTCTTCAACGCCGAATCAAACTAAAGCTCCTTCAGGTGAACCACCTATAAAAAGATTTAAGGAGTCCAGCAACGACTCAATAGACTCAAACAAGAAAGTTGAACCCGAGCAGCCACCCATAGGAAATTCTAATCACTTAGTTCGTAAAAAGAATAACTCGTTCTTCGATAAATTAAAAGAGAGACTCTTAACAGAATCTGGTGAAGAAGGCTCCCTTGTCTGTAAAAGTTGTGGATTCGAAAGTAAATGTTTGTCAGAGCATTCGGTCCATGAGAAGAATTGCGCTATTCTGGCTAACAAGTCAGCCACCAACACATTACATACAAACTTAGGGTCAACGAGATGTCAGCACTGTAGGCACAGGTGCAAATCCAGTGCTGACCTTATCAACCACTTGAAAACCTGTCAAATGAAAGGTGAAACTGGTACCCCAGAAAATCTTAGTGTCAGCGAACAAGACGACGTTGAAATGAAGAATAAAAGTAAGCAAAGTGAACCCCATCCGATGGAAAACGTTGTCTTCGTGTGGAACAACTTCAATACTGAAACTAATAACAAATTCGACACACAGTTAGGTATCAATATAAACGATGATTCAACCTTACCAGAGTACAATACCAGCTTTGACACCGAACTTGTTGATGACAATGAAAGTATGAACTTGTCACCCAGTCAAGCTATTGGTAAAAAGGTTTTCAAATGCCCACACTGCCAGTTCTGGGCATCCACTGCCTCTAGGTTCCATGTGCATATTGTTGGCCATCTAAATAAAAAGCCTTTCGAGTGTTCGTTATGCAAGTACAAGTCAAATTGGCGGTGGGACATTACTAAACACATAAAGCTAAAATCAGTTCGAGATCCATTCCATAATGAAGCTAAAGTTCTCATGACTGACGAGACTGGCAGAAGAAATTACACTAAGTACACTAGATTTTTAGCTATTCCGGTTGTAAATGATATCGGCCGTACTGAATTTCGATACATCGATCAAAACGCTTCAATGGATGAATCTATAGATGTGGATGAGTCTTACAATGAGGCAGCAGATGGATACAATTTTTCTGCCGCTGCTATGCCAATTAATCTTCGTGCTTACGAAGGACACAAAGAAGAATTTCAGCAAAATCTGGACATCAAAAAACCGAAGAAAACTATTTGGAAATGCAAAAAATGCAACTATAAGGATTCTTCCAAGGAAGATCTTTTAGAGCATGTGAGAGAACATTCAAAAGCAGACTTCAATGACACAAAACCCAAAAAGTTAGAAAATATGGCTGACCCTGCTGACTTAGCATATCGCTGCGGCCATTGCAATCAACTGTCTAATTGGAAACACGTTATACAGAGACATTGCCGACTAAAACACGACGGTATAATCAAAGTCATTACTACAGTAAGACCTAAACCAGAGGACGGACTGAATGGAAACGAAGTTCAGGGAGATACCTGTACTAAATGTCCCTTCAAATCGGAAGATAGAAAGCAGTTGCTGGCACATGTGCAACAACACCAACCATCAGCGCAATCCATATTCAAATGCTACTTTTGTTACTTTTTTGTCAAAAACGAGGAAGAGTTAACACAGCATCTCCTATTGCATGGTATCACTGATCCTGAAGAGTATGTTGCGAGGGCAAAAGGCTGCAAATCACCTTTACCGCCAGAACATTTGCATTCAGGATCTACCATAAACAAGCGCCATAAATGCACTGATTGTCCATATGAAACCAACAGCAAATCACAATACATGTACCACGAACAGTTCCACAAACTACCGGCGGAATCGCCCTACAAGTGTCCCGAGTGCAACTACAGTGTGTCCAAACGACACCTGCTACATCAGCACCTGCGCGTTCACGGGTATATTCCAAAAAAAGGAGAATTTGATGAAGTTGACGCATTGTTACATGATTCTATGTATTGTAAAGAGATCAATCTTGAAGAGATTCCCTTTGTCTGGGTATCTGCTAAAGACGAGTTCCATAAAATGTACAAATGTCGATATTGCTCTTACGTTAACTCTCAAGAATGCAACATATCTAATCATGAAAAAATTCATTTCACTCAATACGACGGCAGTGATGTAACAGTTTTCAAATGTTTAGAATGCAAGTTCGCATGTAAGAATGCAGGGACTTTGGCTCAGCACTCGAAATCACATGGAGAAATATACGGCCGAATTTATTGTCCAGTTGAATTAGACGTACCCGACGAAGAACAGATAGCAAAGATACGTAAAGTTATTGACATCGAACAACCGAAGCAATCTAACGACGAAGCTATAGATGGCCAAATTGAAGTTAAAATTTTGTATTATTGTCAAAAGTGTCCAGCGCGATTTTTCTCTATAAGCGACCTTAGAACTCATGATAAATTTCATGAATCAACATTCCCACATCAATGCAATAGTTGCAAATTTTCAACGCCTCAAGAAAGTATCTTGAACGATCATACCGAAGTACATACTGACGAGTATAATACCAAAACTAAGATGCTCAAGTTTTCTCATAATTCACACATTTCTCACCAGCCACCATTTTTAAAAGCTGATCAAAGTTCTGAACACTGTGAAACGCAGTGGGTAGTATCAGCGCCCGCCTCTAACTTTACTGCGGATAAAAAAGTTTTCGACACAAAACATTCGTGTAAAGAATGTCCAGCGACATTTTATAAATTATCGGCGCTCAAATCTCATACGGCATTACATGGTGGCGATGGCGAATATAAATGTAAAAAATGCAATTACGCTGTCACAAATTGCCTCAATCTAGCAAAACATGAAATATTACATGAAAATGATAACAAAGGTCAGTGTTGCGAACCAGAGGACGAAGTAGACTATAAGAACATTCCATTGTCAGGTACTGACTTATTCCAGAGAAAGACGGAAGCTCAGAAAAAGGTATCAAGTGATAAATTAGTAAAACCAAACGATCACTTTCCCCCTGTGCTTCAGGCTGATCCACAATTTGGTTACTTAATGCATGGAAACCCGGACTTTATTTATCCAACATACATGAAGAATGGTCGTCAGAGAGAAAAACGATATAAATGTCATAAATGCCCCTCGGCATTCGAGAAACGCGAACAATATAAAATTCACTTGTCTTTACATGGATCGAAACAAAGGTACAAATGTGAATTATGTGATTATTCTGTTAAATATTATGCTAACTACGTGCAACATATGAGGAAACATCAAATGAATGACGAAGCTTTGGCAGAAAGAAACAAAAGTAATAACGATATATCAGGTTTCGAAACACAACACAACATGCAAGAGAGTACATCAGATACAATTAAGCTCGCAATAAAGACTATACCAAAAGGGGTACCTAAAACAGATTTCCAACTTTTTTCGGTCAGCGATCAGCAAACTCTCAAACTGTTACAACGTAGACGATCGCTAGCAAAGCATACTACCGAAAATAATAACACTGATGTTTCTCCTGCAAAAGATCGTAAAATGCACGTGTGTTTGCTATGTCCATACACAAATCAACGATTAGATGCATTGAATAAACATTACAGGCGACATGATGAACTGGAGAATATTGCCAGTGCTGGTAGTCATAAGTGTCCATATTGTGATCTTGTTGTTGTCCAATCGCACTTTTTGAGAGACCATTTAAAATCTCATTTTATCTATCAAAAGCATTTAACACCAGAGTGCTATGCTGCCAGCCAAGATGTCAGCTTTATAATCAGAAAGGAGGAAGATGATGCTGAACCCGACAACCTTAAACTGGAGACTCAAAATATAGAATGTAGCACGGAAGCTAAAATATATGTAAAACTTCAAACAGGCGAATTATTAGTTGAATAG
- Protein Sequence
- MQFVEKEMVNSDSNDEGASLEMKISKFSPTRESNSHSSVDDEKCNKNSKKPPRKPIPQLIPLNSSTPNQTKAPSGEPPIKRFKESSNDSIDSNKKVEPEQPPIGNSNHLVRKKNNSFFDKLKERLLTESGEEGSLVCKSCGFESKCLSEHSVHEKNCAILANKSATNTLHTNLGSTRCQHCRHRCKSSADLINHLKTCQMKGETGTPENLSVSEQDDVEMKNKSKQSEPHPMENVVFVWNNFNTETNNKFDTQLGININDDSTLPEYNTSFDTELVDDNESMNLSPSQAIGKKVFKCPHCQFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSVRDPFHNEAKVLMTDETGRRNYTKYTRFLAIPVVNDIGRTEFRYIDQNASMDESIDVDESYNEAADGYNFSAAAMPINLRAYEGHKEEFQQNLDIKKPKKTIWKCKKCNYKDSSKEDLLEHVREHSKADFNDTKPKKLENMADPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIIKVITTVRPKPEDGLNGNEVQGDTCTKCPFKSEDRKQLLAHVQQHQPSAQSIFKCYFCYFFVKNEEELTQHLLLHGITDPEEYVARAKGCKSPLPPEHLHSGSTINKRHKCTDCPYETNSKSQYMYHEQFHKLPAESPYKCPECNYSVSKRHLLHQHLRVHGYIPKKGEFDEVDALLHDSMYCKEINLEEIPFVWVSAKDEFHKMYKCRYCSYVNSQECNISNHEKIHFTQYDGSDVTVFKCLECKFACKNAGTLAQHSKSHGEIYGRIYCPVELDVPDEEQIAKIRKVIDIEQPKQSNDEAIDGQIEVKILYYCQKCPARFFSISDLRTHDKFHESTFPHQCNSCKFSTPQESILNDHTEVHTDEYNTKTKMLKFSHNSHISHQPPFLKADQSSEHCETQWVVSAPASNFTADKKVFDTKHSCKECPATFYKLSALKSHTALHGGDGEYKCKKCNYAVTNCLNLAKHEILHENDNKGQCCEPEDEVDYKNIPLSGTDLFQRKTEAQKKVSSDKLVKPNDHFPPVLQADPQFGYLMHGNPDFIYPTYMKNGRQREKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEALAERNKSNNDISGFETQHNMQESTSDTIKLAIKTIPKGVPKTDFQLFSVSDQQTLKLLQRRRSLAKHTTENNNTDVSPAKDRKMHVCLLCPYTNQRLDALNKHYRRHDELENIASAGSHKCPYCDLVVVQSHFLRDHLKSHFIYQKHLTPECYAASQDVSFIIRKEEDDAEPDNLKLETQNIECSTEAKIYVKLQTGELLVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -