Sbip011154.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- -
- Assembly
- GCA_944452705.1
- Location
- CALYCB010000663.1:761015-762778[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.011 1.6 10.6 2.2 1 23 32 54 32 54 0.97 2 15 0.034 4.8 9.1 0.1 2 23 82 104 81 104 0.94 3 15 0.0032 0.45 12.3 4.4 2 23 125 147 124 147 0.95 4 15 6.1e-05 0.0086 17.7 2.1 3 23 154 175 153 175 0.97 5 15 0.021 2.9 9.8 0.3 1 21 179 199 179 200 0.92 6 15 2.2 3e+02 3.4 4.8 2 13 206 217 205 228 0.78 7 15 0.54 76 5.3 2.7 1 23 292 315 292 315 0.95 8 15 0.057 8 8.4 0.1 2 23 343 365 342 365 0.95 9 15 0.018 2.6 10.0 0.9 2 23 388 410 387 410 0.94 10 15 0.22 31 6.5 1.3 3 23 417 438 415 438 0.93 11 15 0.32 45 6.0 1.6 1 23 443 466 443 466 0.94 12 15 0.022 3 9.7 0.3 3 23 473 494 471 494 0.93 13 15 0.00022 0.031 16.0 6.9 1 23 498 521 498 521 0.98 14 15 0.00052 0.074 14.8 0.6 2 23 528 549 527 549 0.96 15 15 4.1e-05 0.0057 18.3 2.8 1 23 555 577 555 577 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAGGAATCCGCGGCTGTCCGTAAAAGAAGAAATTTCGTAATTCTATTCAACAACACAACAGTGATACCATTCAAATGGCGAGGGAAGTTTGCTTGTTTCTTTTGCGGCCAGAACTATACCGACCATCCGGCGTTTGTGAAACACACTAAGTCACACGGACATTGTAGTGTTAAACATGCATCTCTGAAAAATCAGAAATCTAACGGCTCTGAAGTTAAACTGGACGTATCTTTTATAAGCTGCGAGATATGTAGTGAACCTTTTCATACTCTAGACTCTGTTATAGACCATTTGATAGTCACACACAATTTCGATTACGATAAAGATGTACCTATGTACGTAGCTCTTTACAGTTTGGCTGATATGAAATGCTGTGATTGTGGGAAAACGTTTGAGTTCTTTAGGCATTTAGTTACTCATGTGAACAACGATCATTCTGAGAAATCTCTTCTTTGCAAGAGCTGTGGGAAAACTTTCAATAAAAGCAGAGATTTAGCTGCGCATATTAGGCACTATCACAGAAGAGGGTTTAACTGCGCAAAATGCTTTATGAGCTTCGACAATCTAACGTTGTTAAGAGCGCACAGTAAAGTAAAAGCGCCTAAAACATCGTGCAGTTTGTGTGACAAGTCGTTTTCGTCTTTCTGCTCGAAGCAGTGCCATGTTAATAATGCCCATTGCCAACTCGATATAGAGGAAAGTAAAGCAGGGTTGACTGACATGAACAATGAGTTTTACGAAGGTAACATCATGGCCGCCCATAAGCAGTTGATGCAGAGTAAAGCCACAGCGAAAAAGAATAGAATTAACGTAGCTTGCGTATTAAATATGACAACAGCGATTCCGTTTAAGTATTACCAGAGTAGATTCACGTGTTTTTATTGCTCGAAAGATTTCTTGGAGCACGAAGAGATGCGTCAGCACACTATGATGGAGCATCCATTTTGTGACATAGACAGAAAATTCCCAAAAGTTCTCAAAGGAGCTAATATTTATGTCAAATTAGACATTACTTCCTTATCTTGCAGGATTTGCTACCAACCCTTTAACGACCTAGACACTATAGTTGATCACATTATAACTATGCACGATGCGAAGTATGATAAAAGCATAACCGGCATAATGCAACCTTTTAGACTCGAAAAATACAACATGGTATGTCCATTATGCCACGAAACCTTTAACTACTTCAATATACTACTGAAACATATGAACCAAGAGCATTCAGGTAAAGATCATTTATGCGCTCACTGTGGTTCTAAATTCGGAAACAAATCTATACTAGCTTTGCATATAACGAGAGCGCATAGCTCAAACGTATTTAAGTGTTCTGAGTGTGGCATTGAACATACGTCGCTGCTAAAATTGAAGAGTCATCGAGCGAAAATGCATGGCGTTAGGGATGTTATTTGTAAACTCTGTTCCGAAAAATTCCCTTCGGAATATGAAAAGCAGAAGCATCAAATCCAAGTGCACAATATCGGTCATAAATGCACGCACTGCGATCGAATGTTCGTGAAGAACTCTTTCATGAGAAACCACATTAGGCGGACGCATATGAAAGAGAAGAACGTCGAATGTACCGTGTGCAATGAGAAATTCTTCGACAATTTTATGCTCAGACTTCATATGGTTAAGCACACGGGTGCTAGAGACTTTCATTGCGATGTTTGCGGGAAAAGTTTCTTTTGGAAAAAGAACCTTCGTGTTCATATGAACTCGCATAATAAAAAAGCTAATTTAGCTGCTTCAATGTAA
- Protein Sequence
- MSEESAAVRKRRNFVILFNNTTVIPFKWRGKFACFFCGQNYTDHPAFVKHTKSHGHCSVKHASLKNQKSNGSEVKLDVSFISCEICSEPFHTLDSVIDHLIVTHNFDYDKDVPMYVALYSLADMKCCDCGKTFEFFRHLVTHVNNDHSEKSLLCKSCGKTFNKSRDLAAHIRHYHRRGFNCAKCFMSFDNLTLLRAHSKVKAPKTSCSLCDKSFSSFCSKQCHVNNAHCQLDIEESKAGLTDMNNEFYEGNIMAAHKQLMQSKATAKKNRINVACVLNMTTAIPFKYYQSRFTCFYCSKDFLEHEEMRQHTMMEHPFCDIDRKFPKVLKGANIYVKLDITSLSCRICYQPFNDLDTIVDHIITMHDAKYDKSITGIMQPFRLEKYNMVCPLCHETFNYFNILLKHMNQEHSGKDHLCAHCGSKFGNKSILALHITRAHSSNVFKCSECGIEHTSLLKLKSHRAKMHGVRDVICKLCSEKFPSEYEKQKHQIQVHNIGHKCTHCDRMFVKNSFMRNHIRRTHMKEKNVECTVCNEKFFDNFMLRLHMVKHTGARDFHCDVCGKSFFWKKNLRVHMNSHNKKANLAASM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -